Evidence map›Paper›PMID 35712697›Full record

ArticleHGG advances2022

X chromosome inactivation in the human placenta is patchy and distinct from adult tissues.

Tanya N Phung, Kimberly C Olney, Brendan J Pinto, Michelle Silasi, Lauren Perley, Jane O'Bryan, Harvey J Kliman, Melissa A Wilson

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in HGG advances, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 19 citations in OpenAlex.

  1. Review
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  11. Conserved and divergent features of trophoblast stem cells.Journal of molecular endocrinology · 2024
    Review
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  15. Article
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  18. Monosomy X in isogenic human iPSC-derived trophoblast model impacts expression modules preserved in human placenta.Proceedings of the National Academy of Sciences of the United States of America · 2022
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Tanya N PhungCenter for Evolution and Medicine, Arizona State University, PO Box 874501, Tempe, AZ 85282, USA.
Kimberly C OlneyCenter for Evolution and Medicine, Arizona State University, PO Box 874501, Tempe, AZ 85282, USA.
Brendan J PintoCenter for Evolution and Medicine, Arizona State University, PO Box 874501, Tempe, AZ 85282, USA.
Michelle SilasiDepartment of Maternal-Fetal Medicine, Mercy Hospital St. Louis, St. Louis, MO 63141, USA.
Lauren PerleyDepartment of Obstetrics, Gynecology and Reproductive Sciences, Yale University School of Medicine, New Haven, CT 06520, USA.
Jane O'BryanDepartment of Obstetrics, Gynecology and Reproductive Sciences, Yale University School of Medicine, New Haven, CT 06520, USA.
Harvey J KlimanDepartment of Obstetrics, Gynecology and Reproductive Sciences, Yale University School of Medicine, New Haven, CT 06520, USA.
Melissa A WilsonCenter for Evolution and Medicine, Arizona State University, PO Box 874501, Tempe, AZ 85282, USA.
Arizona State University · USYale University · USMercy Hospital · USMilwaukee Public Museum · US

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
Population dynamics and medical consequences of sex chromosome evolutionR35GM124827 · NIGMS · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI WILSON, MELISSA A · 2017 to 2024
$2.7M
Characterization of sex differences in human placentasF31HD101252 · NICHD · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI OLNEY, KIMBERLY · 2020 to 2021
$75k
NCATS NIH HHS UL1 TR001863NICHD NIH HHS F31 HD101252NIGMS NIH HHS R35 GM124827
6 · The paper itself

Abstract

In humans, one of the X chromosomes in genetic females is inactivated by a process called X chromosome inactivation (XCI). Variation in XCI across the placenta may contribute to observed sex differences and variability in pregnancy outcomes. However, XCI has predominantly been studied in human adult tissues. Here, we sequenced and analyzed DNA and RNA from two locations from 30 full-term pregnancies. Implementing an allele-specific approach to examine XCI, we report evidence that XCI in the human placenta is patchy, with large patches of either maternal or paternal X chromosomes inactivated. Further, using similar measurements, we show that this is in contrast to adult tissues, which generally exhibit mosaic X inactivation, where bulk samples exhibit both maternal and paternal X chromosome expression. Further, by comparing skewed samples in placenta and adult tissues, we identify genes that are uniquely inactivated or expressed in the placenta compared with adult tissues, highlighting the need for tissue-specific maps of XCI.

Identifiers

PMID35712697
PMCPMC9194956
OpenAlexW4281384491

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.