Evidence map›Paper›PMID 35711675›Full record

ArticleGastro hep advances2022

Master Transcription Regulators and Transcription Factors Regulate Immune-Associated Differences Between Patients of African and European Ancestry With Colorectal Cancer.

Parvathi A Myer, Hyunjin Kim, Anna M Blümel, Ellen Finnegan, Alexander Kel, Taylor V Thompson, John M Greally, Jochen Hm Prehn, Darran P O'Connor, Richard A Friedman and 2 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Gastro hep advances, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 6 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed, 1 pooled it
0.7field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 1 synthesis or guideline pooled it, 7 citations in OpenAlex.

  1. Pooled it
  2. SOMATIC MUTATION PROFILES IN COLORECTAL CANCERS DIFFER BY POPULATION.medRxiv : the preprint server for health sciences · 2026
    Article
  3. Review
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 4 countries.

Parvathi A MyerMontefiore Medical Center, Albert Einstein Cancer Center, Bronx, NY.
Hyunjin KimSt. Jude's Children's Research Hospital, Memphis, Tennessee TN.
Anna M BlümelSchool of Pharmacy and Biomolecular Sciences, Royal College of Surgeons, Dublin, Ireland.
Ellen FinneganSchool of Pharmacy and Biomolecular Sciences, Royal College of Surgeons, Dublin, Ireland.
Alexander KelGeneXplain GmbH, Wolfenbuettel, Germany.
Taylor V ThompsonAlbert Einstein College of Medicine, Bronx, NY.
John M GreallyAlbert Einstein College of Medicine, Bronx, NY.
Jochen Hm PrehnDepartment of Physiology and Medical Physics, Royal College of Surgeons in Ireland, Dublin, Ireland.
Darran P O'ConnorSchool of Pharmacy and Biomolecular Sciences, Royal College of Surgeons, Dublin, Ireland.
Richard A FriedmanBiomedical Informatics Shared Resource, Herbert Irving Comprehensive Cancer Center, and Department of Biomedical Informatics, Columbia University Irving Medical Center, New York, NY.
Aris FloratosDepartment of Systems Biology, Columbia University, New York, NY.
Sudipto DasSchool of Pharmacy and Biomolecular Sciences, Royal College of Surgeons, Dublin, Ireland.
Royal College of Surgeons in Ireland · IEAlbert Einstein College of Medicine · USColumbia University · USColumbia University Irving Medical Center · USInstitute of Chemical Biology and Fundamental Medicine · RUSt. Jude Children's Research Hospital · US

Funding

Tumor Biology and Microenvironment ProgramP30CA013696 · NCI · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI Anil K Rustgi · 1985 to 2026
$115.3M
Systematic pharmacological targeting of the core mechanisms responsible for maintaining cancer cell stateU54CA209997 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI CALIFANO, ANDREA, HONIG, BARRY H · 2016 to 2021
$10.9M
Paul Calabresis Career Development Award For Clinical Oncology K12CA132783 · NCI · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI PEREZ-SOLER, ROMAN, VERMA, AMIT K. · 2009 to 2019
$8.2M
UNDERSTANDING CELLULAR AND TRANSCRIPTIONAL REGULATORY CHANGES IN HUMAN AGINGR01AG057422 · NIA · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI GREALLY, JOHN, LAPPALAINEN, TUULI · 2018 to 2022
$4.5M
High-performance compute cluster for biomedical computingS10OD012351 · OD · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI CALIFANO, ANDREA · 2012 to 2012
$2.0M
Storage System for High Performance ComputingS10OD021764 · OD · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI CALIFANO, ANDREA · 2016 to 2016
$600k
NCI NIH HHS K12 CA132783NCI NIH HHS P30 CA013696NCI NIH HHS U54 CA209997NIA NIH HHS R01 AG057422NIH HHS S10 OD012351NIH HHS S10 OD021764
6 · The paper itself

Abstract

Background and Aims: Individuals of African (AFR) ancestry have a higher incidence of colorectal cancer (CRC) than those of European (EUR) ancestry and exhibit significant health disparities. Previous studies have noted differences in the tumor microenvironment between AFR and EUR patients with CRC. However, the molecular regulatory processes that underpin these immune differences remain largely unknown. Methods: Multiomics analysis was carried out for 55 AFR and 456 EUR patients with microsatellite-stable CRC using The Cancer Genome Atlas. We evaluated the tumor microenvironment by using gene expression and methylation data, transcription factor, and master transcriptional regulator analysis to identify the cell signaling pathways mediating the observed phenotypic differences. Results: We demonstrate that downregulated genes in AFR patients with CRC showed enrichment for canonical pathways, including chemokine signaling. Moreover, evaluation of the tumor microenvironment showed that cytotoxic lymphocytes and neutrophil cell populations are significantly decreased in AFR compared with EUR patients, suggesting AFR patients have an attenuated immune response. We further demonstrate that molecules called "master transcriptional regulators" (MTRs) play a critical role in regulating the expression of genes impacting key immune processes through an intricate signal transduction network mediated by disease-associated transcription factors (TFs). Furthermore, a core set of these MTRs and TFs showed a positive correlation with levels of cytotoxic lymphocytes and neutrophils across both AFR and EUR patients with CRC, thus suggesting their role in driving the immune infiltrate differences between the two ancestral groups. Conclusion: Our study provides an insight into the intricate regulatory landscape of MTRs and TFs that orchestrate the differences in the tumor microenvironment between patients with CRC of AFR and EUR ancestry.

Indexed as

AFR, AfricanAfrican Americans.ChAMP, Chip Analysis Methylation PipelineCMA, Composite Module AnalystColorectal CancerCRC, colorectal cancerDEGs, differentially expressed genesDMPs, differentially methylated CpG positionsEUR, EuropeanFDR, false discovery rateGenomic ProfilingHealth DisparitiesMCP, microenvironment cell populationMSI-H, microsatellite highMSI-L, microsatellite lowMSS, microsatellite stableMTRs, master transcriptional regulatorsTCGA, The Cancer Genome AtlasTFBS, TF binding siteTFs, transcription factorsTMB, tumor mutation burdenTSS, transcription start site

Identifiers

PMID35711675
PMCPMC9151447
OpenAlexW4225812177

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.