Evidence map›Paper›PMID 35710953›Full record

ArticlePlanta2022

Comparative proteomic analysis of chromosome segment substitution lines of Thai jasmine rice KDML105 under short-term salinity stress.

Vinh Quang Nguyen, Tanee Sreewongchai, Meechai Siangliw, Sittiruk Roytrakul, Chotika Yokthongwattana

Abstract read
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In one paragraph

Article in Planta, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.3field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Proteomic Approaches to Uncover Salt Stress Response Mechanisms in Crops.International journal of molecular sciences · 2022
    Review
  3. Article
  4. Salt stress proteins in plants: An overview.Frontiers in plant science · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Vinh Quang NguyenInterdisciplinary Program in Genetic Engineering, Graduate School, Kasetsart University, Bangkok, 10900, Thailand.
Tanee SreewongchaiDepartment of Agronomy, Faculty of Agriculture, Kasetsart University, Bangkok, 10900, Thailand.
Meechai SiangliwRice Science Center (RSC), Rice Gene Discovery Unit (RGDU), Kasetsart University, Kamphaengsaen, Nakhon Pathom, 73140, Thailand.
Sittiruk RoytrakulFunctional Ingredients and Food Innovation Research Group, National Center for Genetic Engineering and Biotechnology, 113 Thailand Science Park, Phahonyothin Rd, Pathumthani, 12120, Thailand.
Chotika YokthongwattanaDepartment of Biochemistry, Faculty of Science, Kasetsart University, 50 Ngamwongwan Rd, Bangkok, 10900, Thailand. fscicks@ku.ac.th.ORCID http://orcid.org/0000-0001-7016-8384
Kasetsart University · THNational Center for Genetic Engineering and Biotechnology · TH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

MAIN

conclusionsHeat shock proteins, ROS detoxifying enzymes, and ion homeostasis proteins, together with proteins in carbohydrate metabolism, cell structure, brassinosteroids, and carotenoid biosynthesis pathway were up-regulated in CSSLs under salinity stress. Rice is one of the most consumed staple foods worldwide. Salinity stress is a serious global problem affecting rice productivity. Many attempts have been made to select or produce salinity-tolerant rice varieties. Genetics and biochemical approaches were used to study the salinity-responsive pathway in rice to develop salinity tolerant strains. This study investigated the proteomic profiles of chromosome segment substitution lines (CSSLs) developed from KDML105 (Khao Dawk Mali 105, a Thai jasmine rice cultivar) under salinity stress. The CSSLs showed a clear resistant phenotype in response to 150 mM NaCl treatment compared to the salinity-sensitive line, IR29. Liquid chromatography-tandem mass spectrometry using the Ultimate 3000 Nano/Capillary LC System coupled to a Hybrid Quadrupole Q-Tof Impact II™ equipped with a nano-captive spray ion source was applied for proteomic analysis. Based on our criteria, 178 proteins were identified as differentially expressed proteins under salinity stress. Protein functions in DNA replication and transcription, and stress and defense accounted for the highest proportions in response to salinity stress, followed by protein transport and trafficking, carbohydrate metabolic process, signal transduction, and cell structure. The protein interaction network among the 75 up-regulated proteins showed connections between proteins involved in cell wall synthesis, transcription, translation, and in defense responses.

Indexed as

JasminumOryzaChromosomesPlant ProteinsProteomicsSalinitySalt StressStress, PhysiologicalThailandPlant ProteinsChromosome segment substitution line (CSSL)Climate changeRice (Oryza sativa L.)Rice proteomicsSalinity stressSalinity toleranceThai jasmine rice

Identifiers

PMID35710953
OpenAlexW4282973882

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.