ArticleNature communications2022
Disentangling the genetic basis of rhizosphere microbiome assembly in tomato.
Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 81 papers.
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Who cites it
81 citing papers in PubMed.
- Host genetic variation is associated with root-associated microbiome assembly and resistance to Fusarium oxysporum in tobacco.Plant physiology · 2026Article
- The Plant-Microbe Alliance for Environmental Restoration: From Nature-Inspired Solutions to Engineered Ecological Recovery.Microbial biotechnology · 2026Article
- Wild rice locus enables microbiome re-domestication for enhanced nitrogen-use efficiency.Nature microbiology · 2026Article
- Impacts of climate extremes on plant pathogens, microbiomes and plant health.Nature reviews. Microbiology · 2026Review
- Comparative transcriptomic analysis reveals distinct responses of beneficial bacterial endophytes to wild and cultivated rice root exudates.Plant cell reports · 2026Article
- Microbial terroir in winegrowing: revisiting the role of microbial biogeography in terroir expression.Applied and environmental microbiology · 2026Review
- Breeding for beneficial microbial associations.Nature communications · 2026Review
- Evaluation of combined root exudate and rhizosphere microbiota sampling approaches to elucidate plant-soil-microbe interactions.The New phytologist · 2026Article
- Can We Breed Microbiomes to Sustain Plant Productivity?Microbial biotechnology · 2026Review
- Plant health in the era of global changes, holobiont biology, and microbiome-based solutions.Horticulture research · 2026Article
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- Amino-acid-transporter-mediated assembly of rhizosphere microbiota enhances soil organic nitrogen acquisition in rice.Nature plants · 2026Article
- Large-scale multi-omics unveils host-microbiome interactions driving root development and nitrogen acquisition.Nature plants · 2026Article
- A newly isolated Streptomyces nigra strain for the biotechnological production of melanin.Applied microbiology and biotechnology · 2026Article
- Phylogenetic Divergence and Domestication Jointly Shape the Tomato Root Microbiome.Plants (Basel, Switzerland) · 2026Article
- Unveiling essential host genes and keystone microorganisms of the olive tree holobiont linked to Verticillium wilt tolerance.Microbiome · 2025Article
- Identification of microbiome-associated loci in super hybrid rice reveals the regulation of OsBRI1 on nitrogen-dependent root microbiome assembly.BMC plant biology · 2025Article
- Predicting rhizosphere-competence-related catabolic gene clusters in plant-associated bacteria with rhizoSMASH.Nature communications · 2025Article
21 more citing papers are in PubMed but not listed here.
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18 authors.
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Abstract
Microbiomes play a pivotal role in plant growth and health, but the genetic factors involved in microbiome assembly remain largely elusive. Here, we map the molecular features of the rhizosphere microbiome as quantitative traits of a diverse hybrid population of wild and domesticated tomato. Gene content analysis of prioritized tomato quantitative trait loci suggests a genetic basis for differential recruitment of various rhizobacterial lineages, including a Streptomyces-associated 6.31 Mbp region harboring tomato domestication sweeps and encoding, among others, the iron regulator FIT and the water channel aquaporin SlTIP2.3. Within metagenome-assembled genomes of root-associated Streptomyces and Cellvibrio, we identify bacterial genes involved in metabolism of plant polysaccharides, iron, sulfur, trehalose, and vitamins, whose genetic variation associates with specific tomato QTLs. By integrating 'microbiomics' and quantitative plant genetics, we pinpoint putative plant and reciprocal rhizobacterial traits underlying microbiome assembly, thereby providing a first step towards plant-microbiome breeding programs.
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