Evidence map›Paper›PMID 35709529›Full record

ArticleBlood cancer discovery2022

Transcriptional Plasticity Drives Leukemia Immune Escape.

Kenneth Eagle, Taku Harada, Jérémie Kalfon, Monika W Perez, Yaser Heshmati, Jazmin Ewers, Jošt Vrabič Koren, Joshua M Dempster, Guillaume Kugener, Vikram R Paralkar and 5 more

Open access · hybridAbstract read
In one paragraph

Article in Blood cancer discovery, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
3.0field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Lineage-Selective Dependencies in Pediatric Cancers.Cold Spring Harbor perspectives in medicine · 2025
    Review
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  6. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 6 institutions in 1 country.

Kenneth Eagle *Cancer and Blood Disorders Center, Dana-Farber Cancer Institute and Boston Children's Hospital, Harvard Medical School, Boston, Massachusetts.ORCID 0000-0002-4135-2358
Taku Harada *Cancer and Blood Disorders Center, Dana-Farber Cancer Institute and Boston Children's Hospital, Harvard Medical School, Boston, Massachusetts.ORCID 0000-0003-4952-2822
Jérémie KalfonBroad Institute of MIT and Harvard, Cambridge, Massachusetts.ORCID 0000-0002-2818-9728
Monika W PerezCancer and Blood Disorders Center, Dana-Farber Cancer Institute and Boston Children's Hospital, Harvard Medical School, Boston, Massachusetts.ORCID 0000-0003-4019-9790
Yaser HeshmatiCancer and Blood Disorders Center, Dana-Farber Cancer Institute and Boston Children's Hospital, Harvard Medical School, Boston, Massachusetts.ORCID 0000-0003-0963-2496
Jazmin EwersCancer and Blood Disorders Center, Dana-Farber Cancer Institute and Boston Children's Hospital, Harvard Medical School, Boston, Massachusetts.ORCID 0000-0003-4780-8341
Jošt Vrabič KorenDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas.ORCID 0000-0002-4378-2749
Joshua M DempsterBroad Institute of MIT and Harvard, Cambridge, Massachusetts.ORCID 0000-0002-3634-9576
Guillaume KugenerBroad Institute of MIT and Harvard, Cambridge, Massachusetts.ORCID 0000-0002-4697-2847
Vikram R ParalkarDivision of Hematology/Oncology, Department of Medicine, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, Pennsylvania.ORCID 0000-0001-6413-951X
Charles Y LinDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas.ORCID 0000-0002-9155-090X
Neekesh V DhariaCancer and Blood Disorders Center, Dana-Farber Cancer Institute and Boston Children's Hospital, Harvard Medical School, Boston, Massachusetts.ORCID 0000-0001-5048-067X
Kimberly StegmaierCancer and Blood Disorders Center, Dana-Farber Cancer Institute and Boston Children's Hospital, Harvard Medical School, Boston, Massachusetts.ORCID 0000-0003-0218-7895
Stuart H OrkinCancer and Blood Disorders Center, Dana-Farber Cancer Institute and Boston Children's Hospital, Harvard Medical School, Boston, Massachusetts.ORCID 0000-0002-0313-152X
Maxim PimkinCancer and Blood Disorders Center, Dana-Farber Cancer Institute and Boston Children's Hospital, Harvard Medical School, Boston, Massachusetts.ORCID 0000-0002-4784-0483
Broad Institute · USDana-Farber/Boston Children's Cancer and Blood Disorders Center · USBaylor Genetics · USEagle Mount · USHoward Hughes Medical Institute · USUniversity of Pennsylvania · US

Funding

Targeting SYK Kinase in AMLP50CA206963 · NCI · DANA-FARBER CANCER INST · PI GRAUBERT, TIMOTHY A · 2017 to 2021
$10.6M
Research Training in Pediatric OncologyT32CA136432 · NCI · DANA-FARBER CANCER INST · PI SCOTT A ARMSTRONG · 2009 to 2026
$7.9M
Integrating Transforming Approaches to Identify and Target New Vulnerabilities in CancerR35CA210030 · NCI · DANA-FARBER CANCER INST · PI STEGMAIER, KIMBERLY · 2016 to 2022
$7.3M
The Role of PHF6 in HSC self-renewal and myeloid expansionR01HL155144 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI PARALKAR, VIKRAM R. · 2021 to 2024
$2.2M
Molecular Mechanisms of Tissue Stem Cell PlasticityR01HL069142 · NHLBI · DANA-FARBER CANCER INSTITUTE · PI ORKIN, STUART H · 2001 to 2004
$1.7M
NCI NIH HHS P50 CA206963NCI NIH HHS R35 CA210030NCI NIH HHS T32 CA136432NHLBI NIH HHS R01 HL069142NHLBI NIH HHS R01 HL155144
6 · The paper itself

Abstract

Relapse of acute myeloid leukemia (AML) after allogeneic bone marrow transplantation has been linked to immune evasion due to reduced expression of major histocompatibility complex class II (MHCII) genes through unknown mechanisms. In this work, we developed CORENODE, a computational algorithm for genome-wide transcription network decomposition that identified a transcription factor (TF) tetrad consisting of IRF8, MYB, MEF2C, and MEIS1, regulating MHCII expression in AML cells. We show that reduced MHCII expression at relapse is transcriptionally driven by combinatorial changes in the expression of these TFs, where MYB and IRF8 play major opposing roles, acting independently of the IFNγ/CIITA pathway. Beyond the MHCII genes, MYB and IRF8 antagonistically regulate a broad genetic program responsible for cytokine signaling and T-cell stimulation that displays reduced expression at relapse. A small number of cells with altered TF abundance and silenced MHCII expression are present at the time of initial leukemia diagnosis, likely contributing to eventual relapse. SIGNIFICANCE: Our findings point to an adaptive transcriptional mechanism of AML evolution after allogeneic transplantation whereby combinatorial fluctuations of TF expression under immune pressure result in the selection of cells with a silenced T-cell stimulation program. This article is highlighted in the In This Issue feature, p. 369.

Indexed as

Leukemia, Myeloid, AcuteHistocompatibility Antigens Class IIHumansInterferon Regulatory FactorsRecurrenceTransplantation, HomologousHistocompatibility Antigens Class IIInterferon Regulatory Factors

Identifiers

PMID35709529
PMCPMC9897290
OpenAlexW4283018141

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.