Evidence map›Paper›PMID 35708912›Full record

ArticleThe Journal of clinical investigation2022

Satellite repeat RNA expression in epithelial ovarian cancer associates with a tumor-immunosuppressive phenotype.

Rebecca L Porter, Siyu Sun, Micayla N Flores, Emily Berzolla, Eunae You, Ildiko E Phillips, Neelima Kc, Niyati Desai, Eric C Tai, Annamaria Szabolcs and 17 more

Open access · goldAbstract read
In one paragraph

Article in The Journal of clinical investigation, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 23 citations in OpenAlex.

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  11. Chromatin conformational changes at human satellite II contribute to the senescence phenotype in the tumor microenvironment.Proceedings of the National Academy of Sciences of the United States of America · 2023
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

27 authors at 5 institutions in 1 country.

Rebecca L PorterMass General Cancer Center, Harvard Medical School, Charlestown, Massachusetts, USA.
Siyu SunComputational Oncology, Department of Epidemiology and Biostatistics, Memorial Sloan Kettering Cancer Center, New York, New York, USA.
Micayla N FloresMass General Cancer Center, Harvard Medical School, Charlestown, Massachusetts, USA.
Emily BerzollaMass General Cancer Center, Harvard Medical School, Charlestown, Massachusetts, USA.
Eunae YouMass General Cancer Center, Harvard Medical School, Charlestown, Massachusetts, USA.
Ildiko E PhillipsMass General Cancer Center, Harvard Medical School, Charlestown, Massachusetts, USA.
Neelima KcMass General Cancer Center, Harvard Medical School, Charlestown, Massachusetts, USA.
Niyati DesaiMass General Cancer Center, Harvard Medical School, Charlestown, Massachusetts, USA.
Eric C TaiMass General Cancer Center, Harvard Medical School, Charlestown, Massachusetts, USA.
Annamaria SzabolcsMass General Cancer Center, Harvard Medical School, Charlestown, Massachusetts, USA.
Evan R LangMass General Cancer Center, Harvard Medical School, Charlestown, Massachusetts, USA.
Amaya PankajMass General Cancer Center, Harvard Medical School, Charlestown, Massachusetts, USA.
Michael J RaabeMass General Cancer Center, Harvard Medical School, Charlestown, Massachusetts, USA.
Vishal ThaparMass General Cancer Center, Harvard Medical School, Charlestown, Massachusetts, USA.
Katherine H XuMass General Cancer Center, Harvard Medical School, Charlestown, Massachusetts, USA.
Linda T NiemanMass General Cancer Center, Harvard Medical School, Charlestown, Massachusetts, USA.
Daniel C RabeMass General Cancer Center, Harvard Medical School, Charlestown, Massachusetts, USA.
David L KolinDepartment of Pathology, Brigham and Women's Hospital, and.
Elizabeth H StoverDivision of Gynecologic Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
David PepinDepartment of Surgery, Massachusetts General Hospital.
Shannon L StottMass General Cancer Center, Harvard Medical School, Charlestown, Massachusetts, USA.
Vikram DeshpandeDepartment of Pathology, Massachusetts General Hospital, Harvard Medical School, Boston, MA, USA.
Joyce F LiuDivision of Gynecologic Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
Alexander SolovyovComputational Oncology, Department of Epidemiology and Biostatistics, Memorial Sloan Kettering Cancer Center, New York, New York, USA.
Ursula A MatulonisDivision of Gynecologic Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
Benjamin D GreenbaumComputational Oncology, Department of Epidemiology and Biostatistics, Memorial Sloan Kettering Cancer Center, New York, New York, USA.
David T TingMass General Cancer Center, Harvard Medical School, Charlestown, Massachusetts, USA.
Harvard University · USDana-Farber Cancer Institute · USMemorial Sloan Kettering Cancer Center · USBrigham and Women's Hospital · USMassachusetts General Hospital · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Hongbiao Carl Lekaye · 1985 to 2026
$347.4M
Understanding the Relationship of Repeat Expression and MetastasisR01CA240924 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI GREENBAUM, BENJAMIN, TING, DAVID TSAI · 2019 to 2023
$3.3M
A Statistical Physics Framework for Understanding the Role of Repeat RNA in Tumor ImmunityU01CA228963 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI GREENBAUM, BENJAMIN, TING, DAVID TSAI · 2020 to 2024
$3.2M
Benchmarking the Sensitivity and Specificity of the Herringbone Microfluidic Device for Rare Particle CaptureR01CA226871 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI NAHED, BRIAN VALA, STOTT, SHANNON L · 2018 to 2023
$2.3M
The roles of anti-apoptotic proteins BCL-XL and MCL1 in mediating survival of high-grade serous ovarian cancer following drug-induced DNA damageK08CA237871 · NCI · DANA-FARBER CANCER INST · PI STOVER, ELIZABETH HARMON · 2019 to 2023
$921k
NCI NIH HHS K08 CA237871NCI NIH HHS P30 CA008748NCI NIH HHS R01 CA226871NCI NIH HHS R01 CA240924NCI NIH HHS U01 CA228963
6 · The paper itself

Abstract

Aberrant expression of viral-like repeat elements is a common feature of epithelial cancers, and the substantial diversity of repeat species provides a distinct view of the cancer transcriptome. Repeatome profiling across ovarian, pancreatic, and colorectal cell lines identifies distinct clustering independent of tissue origin that is seen with coding gene analysis. Deeper analysis of ovarian cancer cell lines demonstrated that human satellite II (HSATII) satellite repeat expression was highly associated with epithelial-mesenchymal transition (EMT) and anticorrelated with IFN-response genes indicative of a more aggressive phenotype. SATII expression - and its correlation with EMT and anticorrelation with IFN-response genes - was also found in ovarian cancer RNA-Seq data and was associated with significantly shorter survival in a second independent cohort of patients with ovarian cancer. Repeat RNAs were enriched in tumor-derived extracellular vesicles capable of stimulating monocyte-derived macrophages, demonstrating a mechanism that alters the tumor microenvironment with these viral-like sequences. Targeting of HSATII with antisense locked nucleic acids stimulated IFN response and induced MHC I expression in ovarian cancer cell lines, highlighting a potential strategy of modulating the repeatome to reestablish antitumor cell immune surveillance.

Indexed as

Ovarian NeoplasmsRNA, SatelliteCarcinoma, Ovarian EpithelialCell Line, TumorEpithelial-Mesenchymal TransitionFemaleGene Expression Regulation, NeoplasticHumansPhenotypeRNATumor MicroenvironmentRNARNA, SatelliteCancerInnate immunityNoncoding RNAsOncology

Identifiers

PMID35708912
PMCPMC9374379
OpenAlexW4282980840

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.