ArticleArchives of virology2022
Exploring the tymovirales landscape through metatranscriptomics data.
Article in Archives of virology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.
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Who cites it
27 citing papers in PubMed.
- The origins and evolution of the RNA virome in land flora.Molecular plant · 2026Article
- Mining viruses in public databases unveils the diversity within the Deltaflexiviridae family.Archives of virology · 2026Article
- Genome characterization of a novel betaflexivirus from the wild tea plant Camellia taliensis.Archives of virology · 2026Article
- Novel citrivirus and prunevirus genomes further demonstrate the recurrent, independent acquisition of nucleic acid-binding proteins in the family Betaflexiviridae.Genes & genomics · 2026Article
- Plant transcriptome data mining identified twenty-two putative novel taxa in the family Closteroviridae.Archives of virology · 2026Article
- Co-Infection of Three Novel Deltaflexiviruses in an Isolate of the Edible FungusJournal of fungi (Basel, Switzerland) · 2026Article
- Wild and globally traded ornamental aquatic plants harbor diverse plant viruses, including notable crop pathogens.Environmental microbiome · 2025Article
- Article
- Molecular characterization of a novel deltaflexivirus from the plant-pathogenic fungus Neopestalotiopsis nebuloides strain N-7.Archives of virology · 2025Article
- Article
- Insights into diversity, host range, and evolution of iflaviruses in Lepidoptera through transcriptome mining.Virus evolution · 2025Article
- High-Throughput Sequencing Detects a Viral Complex inAdvances in virology · 2025Article
- Identification of nine putative novel members of plant-infecting alphaflexiviruses in public domain plant transcriptomes.Virusdisease · 2024Article
- Exploring the viral landscape of saffron through metatranscriptomic analysis.Virus research · 2024Article
- Probing of plant transcriptomes reveals the hidden genetic diversity of the family Secoviridae.Archives of virology · 2024Article
- Complete Genome Analyses of a Novel Flexivirus with Unique Genome Organization and Three Endornaviruses Hosted by the Mycorrhizal Fungus Terfezia claveryi.Current microbiology · 2024Article
- Bactericera cockerelli Picorna-like Virus and Three New Viruses Found Circulating in Populations of Potato/Tomato Psyllids (Viruses · 2024Article
- Diverse RNA viruses discovered in multiple seagrass species.PloS one · 2024Article
- Identification of two putative novel deltapartitiviruses and an enamovirus in coriander transcriptomes.Archives of microbiology · 2023Article
- Predicted Membrane-Associated Domains in Proteins Encoded by Novel Monopartite Plant RNA Viruses Related to Members of the FamilyInternational journal of molecular sciences · 2023Article
Corrections and comments
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Authors and funding
2 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Tymovirales is an order of viruses with positive-sense RNA genomes that mostly infect plants, but also fungi and insects. The number of genome sequences of viruses that could fit this taxon has been growing in the last few years with the extensive use of high-throughput sequencing. Here, we report the discovery of 31 novel viral genome sequences associated with 27 different host plant species, which were hidden in public databases. These viral sequences were identified through homology searches in more than 3,000 plant transcriptomes from the NCBI Sequence Read Archive (SRA) using known tymovirales sequences as queries. Identification, assembly, and curation of raw SRA reads resulted in 29 viral genome sequences with complete coding regions, and two representing partial genomes. Some of the obtained sequences highlight novel genome organizations for members of the order. Phylogenetic analysis showed that six of the novel viruses are related to alphaflexiviruses, 17 to betaflexiviruses, two to deltaflexiviruses, and six to tymovirids. These findings shed new light on the phylogenetic relationships and evolutionary landscape of this group of viruses. Furthermore, this study illustrates the complexity and genome diversity among members of the order and demonstrates that analyzing public SRA data provides an invaluable tool to accelerate virus discovery and refine virus taxonomy.
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