Evidence map›Paper›PMID 35706385›Full record

ArticleThe New phytologist2022

Genome-wide identification of fitness determinants in the Xanthomonas campestris bacterial pathogen during early stages of plant infection.

Julien S Luneau, Maël Baudin, Thomas Quiroz Monnens, Sébastien Carrère, Olivier Bouchez, Marie-Françoise Jardinaud, Carine Gris, Jonas François, Jayashree Ray, Babil Torralba and 6 more

Open access · hybridAbstract read
In one paragraph

Article in The New phytologist, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
6.3field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 34 citations in OpenAlex.

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  6. The two-component regulator CvsR has a small core regulonbioRxiv : the preprint server for biology · 2025
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  15. Dissimilar gene repertoires ofFrontiers in plant science · 2023
    Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 4 institutions in 2 countries.

Julien S LuneauLIPME, Université de Toulouse, INRAE, CNRS, Université Paul Sabatier, 31320, Castanet-Tolosan, France.ORCID 0000-0002-1917-3468
Maël BaudinPlant Gene Expression Center, USDA, Albany, CA, 94710, USA.ORCID 0000-0001-8103-3813
Thomas Quiroz MonnensLIPME, Université de Toulouse, INRAE, CNRS, Université Paul Sabatier, 31320, Castanet-Tolosan, France.ORCID 0000-0003-3172-0150
Sébastien CarrèreLIPME, Université de Toulouse, INRAE, CNRS, Université Paul Sabatier, 31320, Castanet-Tolosan, France.ORCID 0000-0002-2348-0778
Olivier BouchezGenotoul Genome & Transcriptome (GeT-PlaGe), INRAE, 31320, Castanet-Tolosan, France.ORCID 0000-0002-7255-0058
Marie-Françoise JardinaudLIPME, Université de Toulouse, INRAE, CNRS, Université Paul Sabatier, 31320, Castanet-Tolosan, France.ORCID 0000-0001-8290-7527
Carine GrisLIPME, Université de Toulouse, INRAE, CNRS, Université Paul Sabatier, 31320, Castanet-Tolosan, France.
Jonas FrançoisLIPME, Université de Toulouse, INRAE, CNRS, Université Paul Sabatier, 31320, Castanet-Tolosan, France.
Jayashree RayEnvironmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.ORCID 0000-0003-1112-8723
Babil TorralbaLIPME, Université de Toulouse, INRAE, CNRS, Université Paul Sabatier, 31320, Castanet-Tolosan, France.ORCID 0000-0001-6245-8920
Matthieu ArlatLIPME, Université de Toulouse, INRAE, CNRS, Université Paul Sabatier, 31320, Castanet-Tolosan, France.ORCID 0000-0001-6196-4856
Jennifer D LewisPlant Gene Expression Center, USDA, Albany, CA, 94710, USA.ORCID 0000-0003-4337-8292
Emmanuelle LauberLIPME, Université de Toulouse, INRAE, CNRS, Université Paul Sabatier, 31320, Castanet-Tolosan, France.ORCID 0000-0001-5933-4476
Adam M DeutschbauerDepartment of Plant and Microbial Biology, University of California, Berkeley, CA, 94720, USA.
Laurent D NoëlLIPME, Université de Toulouse, INRAE, CNRS, Université Paul Sabatier, 31320, Castanet-Tolosan, France.ORCID 0000-0002-0110-1423
Alice BoulangerLIPME, Université de Toulouse, INRAE, CNRS, Université Paul Sabatier, 31320, Castanet-Tolosan, France.ORCID 0000-0001-5918-9547
Centre National de la Recherche Scientifique · FRLawrence Berkeley National Laboratory · USUnited States Department of Agriculture · USInstitut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Plant diseases are an important threat to food production. While major pathogenicity determinants required for disease have been extensively studied, less is known on how pathogens thrive during host colonization, especially at early infection stages. Here, we used randomly barcoded-transposon insertion site sequencing (RB-TnSeq) to perform a genome-wide screen and identify key bacterial fitness determinants of the vascular pathogen Xanthomonas campestris pv campestris (Xcc) during infection of the cauliflower host plant (Brassica oleracea). This high-throughput analysis was conducted in hydathodes, the natural entry site of Xcc, in xylem sap and in synthetic media. Xcc did not face a strong bottleneck during hydathode infection. In total, 181 genes important for fitness were identified in plant-associated environments with functional enrichment in genes involved in metabolism but only few genes previously known to be involved in virulence. The biological relevance of 12 genes was independently confirmed by phenotyping single mutants. Notably, we show that XC_3388, a protein with no known function (DUF1631), plays a key role in the adaptation and virulence of Xcc possibly through c-di-GMP-mediated regulation. This study revealed yet unsuspected social behaviors adopted by Xcc individuals when confined inside hydathodes at early infection stages.

Indexed as

BrassicaXanthomonas campestrisBacterial ProteinsPlant DiseasesVirulenceXylemBacterial ProteinsBrassica oleraceafitnesshydathodesRB-TnSeqXanthomonasxylem

Identifiers

PMID35706385
PMCPMC9543026
OpenAlexW4282972680

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.