Evidence map›Paper›PMID 35702822›Full record

ArticleCancer medicine2023

Oncogenic fusion transcript analysis identified ADAP1-NOC4L, potentially associated with metastatic colorectal cancer.

Amin Talebi, Soodabeh Shahidsales, Mohsen Aliakbarian, Masoud Pezeshki Rad, Mohammad Amin Kerachian

Open access · goldAbstract read
In one paragraph

Article in Cancer medicine, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.6field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Whole transcriptome analysis identifiesCancer pathogenesis and therapy · 2025
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Amin TalebiMedical Genetics Research Center, Mashhad University of Medical Sciences, Mashhad, Iran.
Soodabeh ShahidsalesCancer Research Center, Mashhad University of Medical Sciences, Mashhad, Iran.
Mohsen AliakbarianFaculty of Medicine, Surgical Oncology Research Center, Mashhad University of Medical Sciences, Mashhad, Iran.
Masoud Pezeshki RadFaculty of Medicine, Department of Radiology, Mashhad University of Medical Sciences, Mashhad, Iran.
Mohammad Amin KerachianMedical Genetics Research Center, Mashhad University of Medical Sciences, Mashhad, Iran.ORCID 0000-0001-5016-2882
Mashhad University of Medical Sciences · IR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

purposeFusion transcripts are transcriptome-mediated alterations involved in tumorigenesis and are considered as diagnostic, prognostic, and therapeutic biomarkers. In metastatic colorectal carcinoma (mCRC), fusion transcripts are rarely reported. The main challenge is to identify driver chimeras with a significant role in cancer progression.

methodsIn the present study, 86 RNA sequencing data samples were analyzed to discover driver fusion transcripts. Functional assays included clonogenic cell survival, wound-healing, and transwell cell invasion. Quantitative expression analysis of epithelial-mesenchymal transition (EMT), apoptotic regulators, and metastatic markers were examined for the candidate fusion genes. Kaplan-Meier survival analysis was performed using patient overall survival (OS).

resultsA variety of driver fusions were identified. Fourteen fusion genes (51% of mCRC), each at least found in two mCRC samples, were determined as oncogenic fusion transcripts by in silico analysis of their functions. Among them, two recurrent chimeric transcripts confirmed by Sanger sequencing were selected. Positive expression of ADAP1-NOC4L was significantly associated with an increased risk of poor OS in mCRC patients. In vitro transforming potential for the chimera, resulting from the fusion of ADAP1 and NOC4L was assessed. Overexpression of this fusion gene increased cell proliferation and enhanced migration and invasion of CRC cells. In addition, it significantly upregulated EMT and anti-apoptotic markers.

conclusionsADAP1-NOC4L transcript chimera, a driver chimera identified in this study, provides new insight into the underlying mechanisms involved in the development and spread of mCRC. It suggests the potential of RNA-based alterations as novel targets for personalized medicine in clinical practice.

Indexed as

Colonic NeoplasmsColorectal NeoplasmsRectal NeoplasmsAdaptor Proteins, Signal TransducingCarcinogenesisCell Line, TumorCell Transformation, NeoplasticEpithelial-Mesenchymal TransitionHumansNerve Tissue ProteinsRibonucleoproteins, Small NuclearADAP1 protein, humanAdaptor Proteins, Signal TransducingNerve Tissue ProteinsRibonucleoproteins, Small Nuclearfunctional studyfusion transcriptsmetastatic colorectal cancerRNA sequencingtranscript chimera

Identifiers

PMID35702822
PMCPMC9844608
OpenAlexW4282962662

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.