Evidence map›Paper›PMID 35700217›Full record

ArticleMolecular biology and evolution2022

Tree House Explorer: A Novel Genome Browser for Phylogenomics.

Andrew J Harris, Nicole M Foley, Tiffani L Williams, William J Murphy

Abstract read
In one paragraph

Article in Molecular biology and evolution, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
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  5. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Andrew J HarrisVeterinary Integrative Biosciences, Texas A&M University, College Station, TX, USA.ORCID 0000-0001-6373-7446
Nicole M FoleyVeterinary Integrative Biosciences, Texas A&M University, College Station, TX, USA.
Tiffani L WilliamsDepartment of Computer Science, University of Illinois at Urbana-Champaign, Urbana, IL, USA.
William J MurphyVeterinary Integrative Biosciences, Texas A&M University, College Station, TX, USA.ORCID 0000-0003-3699-0723

Funding

Diverse Predoctoral Training in GeneticsT32GM135115 · NIGMS · TEXAS A&M UNIVERSITY HEALTH SCIENCE CTR · PI ADELMAN, ZACH N. · 2020 to 2024
$901k
NIGMS NIH HHS T32 GM135115
6 · The paper itself

Abstract

Tree House Explorer (THEx) is a genome browser that integrates phylogenomic data and genomic annotations into a single interactive platform for combined analysis. THEx allows users to visualize genome-wide variation in evolutionary histories and genetic divergence on a chromosome-by-chromosome basis, with continuous sliding window comparisons to gene annotations (GFF/GTF), recombination rates, and other user-specified, highly customizable feature annotations. THEx provides a new platform for interactive phylogenomic data visualization to analyze and interpret the diverse evolutionary histories woven throughout genomes. Hosted on Conda, THEx integrates seamlessly into new or pre-existing workflows.

Identifiers

PMID35700217
PMCPMC9246335

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.