Evidence map›Paper›PMID 35699626›Full record

ArticleThe New phytologist2022

Genome-enabled discovery of candidate virulence loci in Striga hermonthica, a devastating parasite of African cereal crops.

Suo Qiu, James M Bradley, Peijun Zhang, Roy Chaudhuri, Mark Blaxter, Roger K Butlin, Julie D Scholes

Open access · hybridAbstract read
In one paragraph

Article in The New phytologist, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
11.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 35 citations in OpenAlex.

  1. Review
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  11. A cluster of putative resistance genes is associated with a dominant resistance to sunflower broomrape.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024
    Article
  12. Article
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  15. Phenolic signals for prehaustorium formation inFrontiers in plant science · 2022
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 3 countries.

Suo Qiu *School of Biosciences, University of Sheffield, Western Bank, Sheffield, S10 2TN, UK.ORCID 0000-0003-4913-2015
James M Bradley *School of Biosciences, University of Sheffield, Western Bank, Sheffield, S10 2TN, UK.ORCID 0000-0001-9579-6803
Peijun ZhangSchool of Biosciences, University of Sheffield, Western Bank, Sheffield, S10 2TN, UK.ORCID 0000-0002-2004-8429
Roy ChaudhuriSchool of Biosciences, University of Sheffield, Western Bank, Sheffield, S10 2TN, UK.ORCID 0000-0001-5037-2695
Mark BlaxterInstitute of Evolutionary Biology, School of Biological Sciences, The University of Edinburgh, Ashworth Laboratories, Charlotte Auerbach Road, Edinburgh, EH9 3FL, UK.ORCID 0000-0003-2861-949X
Roger K ButlinSchool of Biosciences, University of Sheffield, Western Bank, Sheffield, S10 2TN, UK.ORCID 0000-0003-4736-0954
Julie D ScholesSchool of Biosciences, University of Sheffield, Western Bank, Sheffield, S10 2TN, UK.ORCID 0000-0002-8540-5319
University of Sheffield · GBUniversity of Gothenburg · SEWellcome Sanger Institute · GB

Funding

Biotechnology and Biological Sciences Research Council BB/J011703/1Biotechnology and Biological Sciences Research Council BB/P022456/1
6 · The paper itself

Abstract

Parasites have evolved proteins, virulence factors (VFs), that facilitate plant colonisation, however VFs mediating parasitic plant-host interactions are poorly understood. Striga hermonthica is an obligate, root-parasitic plant of cereal hosts in sub-Saharan Africa, causing devastating yield losses. Understanding the molecular nature and allelic variation of VFs in S. hermonthica is essential for breeding resistance and delaying the evolution of parasite virulence. We assembled the S. hermonthica genome and identified secreted proteins using in silico prediction. Pooled sequencing of parasites growing on a susceptible and a strongly resistant rice host allowed us to scan for loci where selection imposed by the resistant host had elevated the frequency of alleles contributing to successful colonisation. Thirty-eight putatively secreted VFs had very different allele frequencies with functions including host cell wall modification, protease or protease inhibitor and kinase activities. These candidate loci had significantly higher Tajima's D than the genomic background, consistent with balancing selection. Our results reveal diverse strategies used by S. hermonthica to overcome different layers of host resistance. Understanding the maintenance of variation at virulence loci by balancing selection will be critical to managing the evolution of virulence as part of a sustainable control strategy.

Indexed as

ParasitesStrigaAnimalsCrops, AgriculturalEdible GrainPeptide HydrolasesPlant BreedingProtease InhibitorsVirulenceVirulence FactorsPeptide HydrolasesProtease InhibitorsVirulence Factorsparasitic plantspopulation genomicssecretomeStriga genomeStriga hermonthicavirulence factors (VFs)

Identifiers

PMID35699626
PMCPMC9795911
OpenAlexW4282944237

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.