Evidence map›Paper›PMID 35698912›Full record

ArticleThe EMBO journal2022

Cryo-EM structures of pentameric autoinducer-2 exporter from Escherichia coli reveal its transport mechanism.

Radhika Khera, Ahmad R Mehdipour, Jani R Bolla, Joerg Kahnt, Sonja Welsch, Ulrich Ermler, Cornelia Muenke, Carol V Robinson, Gerhard Hummer, Hao Xie and 1 more

Open access · hybridAbstract read
In one paragraph

Article in The EMBO journal, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 4 countries.

Radhika KheraDepartment of Molecular Membrane Biology, Max Planck Institute of Biophysics, Frankfurt am Main, Germany.ORCID 0000-0002-5489-9678
Ahmad R MehdipourDepartment of Theoretical Biophysics, Max Planck Institute of Biophysics, Frankfurt am Main, Germany.
Jani R BollaPhysical and Theoretical Chemistry Laboratory, University of Oxford, Oxford, UK.
Joerg KahntCore Facility for Mass Spectrometry and Proteomics, Max Planck Institute for Terrestrial Microbiology, Marburg, Germany.
Sonja WelschCentral Electron Microscopy Facility, Max Planck Institute of Biophysics, Frankfurt am Main, Germany.ORCID 0000-0002-6049-6664
Ulrich ErmlerDepartment of Molecular Membrane Biology, Max Planck Institute of Biophysics, Frankfurt am Main, Germany.
Cornelia MuenkeDepartment of Molecular Membrane Biology, Max Planck Institute of Biophysics, Frankfurt am Main, Germany.
Carol V RobinsonPhysical and Theoretical Chemistry Laboratory, University of Oxford, Oxford, UK.
Gerhard HummerDepartment of Theoretical Biophysics, Max Planck Institute of Biophysics, Frankfurt am Main, Germany.ORCID 0000-0001-7768-746X
Hao XieDepartment of Molecular Membrane Biology, Max Planck Institute of Biophysics, Frankfurt am Main, Germany.ORCID 0000-0002-2422-2527
Hartmut MichelDepartment of Molecular Membrane Biology, Max Planck Institute of Biophysics, Frankfurt am Main, Germany.ORCID 0000-0003-4351-7846
Max Planck Institute of Biophysics · DEUniversity of Oxford · GBAblynx (Belgium) · BEGoethe University Frankfurt · DEMax Planck Institute for Terrestrial Microbiology · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacteria utilize small extracellular molecules to communicate in order to collectively coordinate their behaviors in response to the population density. Autoinducer-2 (AI-2), a universal molecule for both intra- and inter-species communication, is involved in the regulation of biofilm formation, virulence, motility, chemotaxis, and antibiotic resistance. While many studies have been devoted to understanding the biosynthesis and sensing of AI-2, very little information is available on its export. The protein TqsA from Escherichia coli, which belongs to the AI-2 exporter superfamily, has been shown to export AI-2. Here, we report the cryogenic electron microscopic structures of two AI-2 exporters (TqsA and YdiK) from E. coli at 3.35 Å and 2.80 Å resolutions, respectively. Our structures suggest that the AI-2 exporter exists as a homo-pentameric complex. In silico molecular docking and native mass spectrometry experiments were employed to demonstrate the interaction between AI-2 and TqsA, and the results highlight the functional importance of two helical hairpins in substrate binding. We propose that each monomer works as an independent functional unit utilizing an elevator-type transport mechanism.

Indexed as

Escherichia coliHomoserineBacterial ProteinsCryoelectron MicroscopyLactonesMolecular Docking SimulationQuorum SensingBacterial ProteinsHomoserineLactonesN-octanoylhomoserine lactoneautoinducer-2pentamerquorum sensingTqsAYdiK

Identifiers

PMID35698912
PMCPMC9475539
OpenAlexW4282840268

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.