Evidence map›Paper›PMID 35698040›Full record

ArticleBMC plant biology2022

Comprehensive molecular evaluation of the histone methyltransferase gene family and their important roles in two-line hybrid wheat.

Renwei Sun, Jie Gong, Yongjie Liu, Zhaobo Chen, Fengting Zhang, Jiangang Gao, Junmei Cao, Xianchao Chen, Shengquan Zhang, Changping Zhao and 1 more

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.6field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. DNA methylation in plant heterosis: mechanisms and prospects.Functional & integrative genomics · 2025
    Review
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Renwei Sun *Institute of Hybrid Wheat, Beijing Academy of Agriculture and Forestry Sciences (BAAFS), Beijing, 100097, China.
Jie Gong *Institute of Hybrid Wheat, Beijing Academy of Agriculture and Forestry Sciences (BAAFS), Beijing, 100097, China.
Yongjie LiuInstitute of Hybrid Wheat, Beijing Academy of Agriculture and Forestry Sciences (BAAFS), Beijing, 100097, China.
Zhaobo ChenInstitute of Hybrid Wheat, Beijing Academy of Agriculture and Forestry Sciences (BAAFS), Beijing, 100097, China.
Fengting ZhangInstitute of Hybrid Wheat, Beijing Academy of Agriculture and Forestry Sciences (BAAFS), Beijing, 100097, China.
Jiangang GaoInstitute of Hybrid Wheat, Beijing Academy of Agriculture and Forestry Sciences (BAAFS), Beijing, 100097, China.
Junmei CaoInstitute of Grain Crops, Xinjiang Academy of Agricultural Sciences, Urumqi, 830091, China.
Xianchao ChenInstitute of Hybrid Wheat, Beijing Academy of Agriculture and Forestry Sciences (BAAFS), Beijing, 100097, China.
Shengquan ZhangInstitute of Hybrid Wheat, Beijing Academy of Agriculture and Forestry Sciences (BAAFS), Beijing, 100097, China. zsq8200@126.com.
Changping ZhaoInstitute of Hybrid Wheat, Beijing Academy of Agriculture and Forestry Sciences (BAAFS), Beijing, 100097, China. cp_zhao@vip.sohu.com.
Shiqing GaoInstitute of Hybrid Wheat, Beijing Academy of Agriculture and Forestry Sciences (BAAFS), Beijing, 100097, China. gshiq@126.com.
Beijing Academy of Agricultural and Forestry Sciences · CNXinjiang Academy of Agricultural Sciences · CN

Funding

Basic scientific research funding projects of public welfare scientific research institutes in Xinjiang Uygur Autonomous Region KY2019009Beijing Academy of Agriculture and Forestry Sciences Program QNJJ202008Beijing Science and Technology Plan Z191100004019014Important Crops Genetically Modified New Germplasm Creation KJCX20200205
6 · The paper itself

Abstract

backgroundHistone methylation usually plays important roles in plant development through post-translational regulation and may provide a new visual field for heterosis. The histone methyltransferase gene family has been identified in various plants, but its members and functions in hybrid wheat related in heterosis is poorly studied.

resultsIn this study, 175 histone methyltransferase (HMT) genes were identified in wheat, including 152 histone lysine methyltransferase (HKMT) genes and 23 protein arginine methyltransferase (PRMT) genes. Gene structure analysis, physicochemical properties and subcellular localization predictions of the proteins, exhibited the adequate complexity of this gene family. As an allohexaploid species, the number of the genes (seven HKMTs orthologous groups and four PRMTs orthologous groups) in wheat were about three times than those in diploids and showed certain degrees of conservation, while only a small number of subfamilies such as ASH-like and Su-(var) subfamilies have expanded their members. Transcriptome analysis showed that HMT genes were mainly expressed in the reproductive organs. Expression analysis showed that some TaHMT genes with different trends in various hybrid combinations may be regulated by lncRNAs with similar expression trends. Pearson correlation analysis of the expression of TaHMT genes and two yield traits indicated that four DEGs may participate in the yield heterosis of two-line hybrid wheat. ChIP-qPCR results showed that the histone modifications (H3K4me3, H3K36me3 and H3K9ac) enriched in promoter regions of three TaCCA1 genes which are homologous to Arabidopsis heterosis-related CCA1/LHY genes. The higher expression levels of TaCCA1 in F

conclusionsOur study identified characteristics of the histone methyltransferase gene family and enhances the understanding of the evolution and function of these members in allohexaploid wheat. The causes of heterosis of two-line hybrid wheat were partially explained from the perspective of histone modifications.

Indexed as

ArabidopsisTriticumGene Expression ProfilingGene Expression Regulation, PlantHistone MethyltransferasesHybrid VigorHistone MethyltransferasesGene expressionHeterosisHistone methyltransferaseHybrid wheatPhylogenetic analysisTaCCA1

Identifiers

PMID35698040
PMCPMC9190116
OpenAlexW4282565458

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.