Evidence map›Paper›PMID 35697806›Full record

ArticleNature biotechnology2022

A red light-responsive photoswitch for deep tissue optogenetics.

Yuto Kuwasaki, Kazushi Suzuki, Gaigai Yu, Shota Yamamoto, Takahiro Otabe, Yuki Kakihara, Michiru Nishiwaki, Keita Miyake, Keiji Fushimi, Ramsey Bekdash and 5 more

Abstract read
PubMed Publisher
In one paragraph

Article in Nature biotechnology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
8.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 87 citations in OpenAlex.

  1. Article
  2. Review
  3. Mechanically Interlocked Indigo Photoswitches.Angewandte Chemie (International ed. in English) · 2026
    Article
  4. Review
  5. Engineered Optogenetic Circuits In Yeast with Self-Sustained Outputs.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Review
  12. Review
  13. Article
  14. Article
  15. Article
  16. Optogenetic engineering for precision cancer immunotherapy.Trends in pharmacological sciences · 2025
    Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 2 countries.

Yuto KuwasakiGraduate School of Arts and Sciences, The University of Tokyo, Tokyo, Japan.
Kazushi SuzukiGraduate School of Arts and Sciences, The University of Tokyo, Tokyo, Japan.
Gaigai YuGraduate School of Arts and Sciences, The University of Tokyo, Tokyo, Japan.
Shota YamamotoGraduate School of Arts and Sciences, The University of Tokyo, Tokyo, Japan.
Takahiro OtabeGraduate School of Arts and Sciences, The University of Tokyo, Tokyo, Japan.
Yuki KakiharaGraduate School of Arts and Sciences, The University of Tokyo, Tokyo, Japan.
Michiru NishiwakiGraduate School of Arts and Sciences, The University of Tokyo, Tokyo, Japan.
Keita MiyakeGraduate School of Science and Technology, Shizuoka University, Shizuoka, Japan.
Keiji FushimiGraduate School of Science and Technology, Shizuoka University, Shizuoka, Japan.
Ramsey BekdashDepartment of Rehabilitation and Regenerative Medicine, Columbia Stem Cell Initiative, Columbia University, New York, NY, USA.ORCID http://orcid.org/0000-0003-1825-7130
Yoshihiro ShimizuLaboratory for Cell-Free Protein Synthesis, RIKEN Center for Biosystems Dynamics Research, Osaka, Japan.ORCID http://orcid.org/0000-0003-3499-1394
Rei NarikawaGraduate School of Science and Technology, Shizuoka University, Shizuoka, Japan.
Takahiro NakajimaGraduate School of Arts and Sciences, The University of Tokyo, Tokyo, Japan.
Masayuki YazawaDepartment of Rehabilitation and Regenerative Medicine, Columbia Stem Cell Initiative, Columbia University, New York, NY, USA.ORCID http://orcid.org/0000-0002-5730-6583
Moritoshi SatoGraduate School of Arts and Sciences, The University of Tokyo, Tokyo, Japan. moritoshisato@g.ecc.u-tokyo.ac.jp.ORCID http://orcid.org/0000-0002-3095-5831
Tokyo University of the Arts · JPShizuoka University · JPColumbia University · USRIKEN Center for Biosystems Dynamics Research · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Red light penetrates deep into mammalian tissues and has low phototoxicity, but few optogenetic tools that use red light have been developed. Here we present MagRed, a red light-activatable photoswitch that consists of a red light-absorbing bacterial phytochrome incorporating a mammalian endogenous chromophore, biliverdin and a photo-state-specific binder that we developed using Affibody library selection. Red light illumination triggers the binding of the two components of MagRed and the assembly of split-proteins fused to them. Using MagRed, we developed a red light-activatable Cre recombinase, which enables light-activatable DNA recombination deep in mammalian tissues. We also created red light-inducible transcriptional regulators based on CRISPR-Cas9 that enable an up to 378-fold activation (average, 135-fold induction) of multiple endogenous target genes. MagRed will facilitate optogenetic applications deep in mammalian organisms in a variety of biological research areas.

Indexed as

LightOptogeneticsAnimalsMammals

Identifiers

PMID35697806
OpenAlexW4282588100

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.