Evidence map›Paper›PMID 35697790›Full record

ArticleLeukemia2022

Genomic profiling identifies distinct genetic subtypes in extra-nodal natural killer/T-cell lymphoma.

Gehong Dong, Xuxiang Liu, Lifu Wang, Wenjuan Yin, Alyssa Bouska, Qiang Gong, Kunal Shetty, Lu Chen, Sunandini Sharma, Jibin Zhang and 18 more

Open access · greenAbstract read
In one paragraph

Article in Leukemia, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
6.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 42 citations in OpenAlex.

  1. Role of PRDM1 in natural killer cells.Molecular biology reports · 2026
    Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Epstein-Barr Virus-Associated T/NK-Cell Neoplasms.Journal of medical virology · 2026
    Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. Review
  12. Review
  13. Article
  14. Article
  15. Article
  16. EBV-Related Lymphoproliferative Diseases: A Review in Light of New Classifications.Mediterranean journal of hematology and infectious diseases · 2024
    Review
  17. Article
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

28 authors at 11 institutions in 5 countries.

Gehong Dong *Department of Pathology, City of Hope National Medical Center, Duarte, CA, 91010, USA.
Xuxiang Liu *Department of Pathology, City of Hope National Medical Center, Duarte, CA, 91010, USA.
Lifu Wang *Department of Pathology, Henan Provincial People's Hospital, Zhengzhou University People's Hospital, Henan University People's Hospital, Zhengzhou, 450003, China.
Wenjuan Yin *Department of Pathology, The Cancer Hospital of the University of Chinese Academy of Sciences (Zhejiang Cancer Hospital), Hangzhou, 310022, China.
Alyssa BouskaDepartment of Pathology and Microbiology, University of Nebraska Medical Center, Omaha, NE, 68198, USA.
Qiang GongDepartment of Pathology, City of Hope National Medical Center, Duarte, CA, 91010, USA.
Kunal ShettyDepartment of Pathology, City of Hope National Medical Center, Duarte, CA, 91010, USA.
Lu ChenDepartment of Computational and Quantitative Medicine, City of Hope, Duarte, CA, 91010, USA.
Sunandini SharmaDepartment of Pathology and Microbiology, University of Nebraska Medical Center, Omaha, NE, 68198, USA.
Jibin ZhangDepartment of Pathology, City of Hope National Medical Center, Duarte, CA, 91010, USA.
Carmen Lome-MaldonadoDepartamento de Patologia, Instituto Nacional de Cancerologia, 14080, Ciudad de México, Mexico.
Leticia Quintanilla-MartinezInstitute of Pathology and Neuropathology, Eberhard Karls University of Tübingen and Comprehensive Cancer Center, University Hospital Tübingen, 72076, Tübingen, Germany.ORCID 0000-0001-7156-5365
Yuping LiDepartment of Pathology, City of Hope National Medical Center, Duarte, CA, 91010, USA.ORCID 0000-0002-6514-6719
Joo Y SongDepartment of Pathology, City of Hope National Medical Center, Duarte, CA, 91010, USA.
Wenyan ZhangDepartment of Pathology, West China Hospital, Chengdu, 610041, China.
Yunfei ShiDepartment of Pathology, City of Hope National Medical Center, Duarte, CA, 91010, USA.
Jinhui WangIntegrative Genomics Core, City of Hope, Duarte, CA, 91010, USA.
Lingbo KongDepartment of Pathology, City of Hope National Medical Center, Duarte, CA, 91010, USA.
Xiwei WuIntegrative Genomics Core, City of Hope, Duarte, CA, 91010, USA.
Jingwen WangDepartment of Hematology, Beijing Tongren Hospital, Capital Medical University, 100730, Beijing, China.
Hong-Gang LiuDepartment of Pathology, Beijing Tiantan Hospital, Capital Medical University, 100070, Beijing, China.
Lingfei KongDepartment of Pathology, Henan Provincial People's Hospital, Zhengzhou University People's Hospital, Henan University People's Hospital, Zhengzhou, 450003, China.
Wenyong SunDepartment of Pathology, The Cancer Hospital of the University of Chinese Academy of Sciences (Zhejiang Cancer Hospital), Hangzhou, 310022, China.
Weiping LiuDepartment of Pathology, West China Hospital, Chengdu, 610041, China.
Lili WangDepartment of Systems Biology, Beckman Research Institute, City of Hope, Monrovia, CA, 91016, USA.ORCID 0000-0001-5028-2868
Timothy W McKeithanDepartment of Pathology, City of Hope National Medical Center, Duarte, CA, 91010, USA.
Javeed IqbalDepartment of Pathology and Microbiology, University of Nebraska Medical Center, Omaha, NE, 68198, USA. jiqbal@unmc.edu.ORCID 0000-0003-3668-0629
Wing C ChanDepartment of Pathology, City of Hope National Medical Center, Duarte, CA, 91010, USA. jochan@coh.org.
City Of Hope National Medical Center · USBeijing Tongren Hospital · CNChinese Academy of Sciences · CNCity of Hope · USHenan University · CNSichuan University · CNUniversity of Nebraska Medical Center · USCapital Medical University · CNInstituto Nacional de Cancerología · MXNebraska Medical Center · USUniversity of Tübingen · DE

Funding

Transgenic Mouse FacilityP30CA033572 · NCI · CITY OF HOPE/BECKMAN RESEARCH INSTITUTE · PI STANLEY R. HAMILTON · 1985 to 2026
$86.3M
Transplant for Lymphoma:Therapy-Related LeukemiaP50CA107399 · NCI · CITY OF HOPE/BECKMAN RESEARCH INSTITUTE · PI FORMAN, STEPHEN J, KWAK, LARRY W · 2004 to 2022
$35.5M
Preclinical Models and Therapeutics CoreP01CA229100 · NCI · MAYO CLINIC ARIZONA · PI INGHIRAMI, GIORGIO · 2018 to 2022
$10.2M
NCI NIH HHS P01 CA229100NCI NIH HHS P30 CA033572NCI NIH HHS P50 CA107399
6 · The paper itself

Abstract

Extra-nodal NK/T-cell lymphoma, nasal type (ENKTCL) is a highly aggressive Epstein-Barr virus associated lymphoma, typically presenting in the nasal and paranasal areas. We assembled a large series of ENKTCL (n = 209) for comprehensive genomic analysis and correlative clinical study. The International Lymphoma Prognostic Index (IPI), site of disease, stage, lymphadenopathy, and hepatomegaly were associated with overall survival. Genetic analysis revealed frequent oncogenic activation of the JAK/STAT3 pathway and alterations in tumor suppressor genes (TSGs) and genes associated with epigenomic regulation. Integrated genomic analysis including recurrent mutations and genomic copy number alterations using consensus clustering identified seven distinct genetic clusters that were associated with different clinical outcomes, thus constituting previously unrecognized risk groups. The genetic profiles of ENTKCLs from Asian and Hispanic ethnic groups showed striking similarity, indicating shared pathogenetic mechanism and tumor evolution. Interestingly, we discovered a novel functional cooperation between activating STAT3 mutations and loss of the TSG, PRDM1, in promoting NK-cell growth and survival. This study provides a genetic roadmap for further analysis and facilitates investigation of actionable therapeutic opportunities in this aggressive lymphoma.

Indexed as

Epstein-Barr Virus InfectionsLymphoma, Extranodal NK-T-CellLymphoma, T-Cell, PeripheralGenetic ProfileGenomicsHerpesvirus 4, HumanHumansKiller Cells, Natural

Identifiers

PMID35697790
PMCPMC10499270
OpenAlexW4282841376

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.