Evidence map›Paper›PMID 35696758›Full record

ArticleJournal of inorganic biochemistry2022

Substitution of the sole tryptophan of the cupredoxin, amicyanin, with 5-hydroxytryptophan alters fluorescence properties and energy transfer to the type 1 copper site.

Anthony J Pastore, Elise Ficaretta, Abhishek Chatterjee, Victor L Davidson

Open access · greenAbstract read
In one paragraph

Article in Journal of inorganic biochemistry, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 45% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Anthony J PastoreBurnett School of Biomedical Sciences, College of Medicine, University of Central Florida, Orlando, FL, 32827, USA.
Elise FicarettaDepartment of Chemistry, Boston College, 2609 Beacon Street, Chestnut Hill, MA 02467, USA.
Abhishek ChatterjeeDepartment of Chemistry, Boston College, 2609 Beacon Street, Chestnut Hill, MA 02467, USA.
Victor L DavidsonBurnett School of Biomedical Sciences, College of Medicine, University of Central Florida, Orlando, FL, 32827, USA. Electronic address: victor.davidson@ucf.edu.
Boston College · USUniversity of Central Florida · US

Funding

A genetically encoded toolset to decipher the biology of post-translational modifications in the mammalian proteomeR35GM136437 · NIGMS · BOSTON COLLEGE · PI Abhishek Chatterjee · 2020 to 2026
$4.0M
Mechanisms of Catalysis and Cofactor Biosynthesis of Redox Enzymes with Unusual CofactorsR35GM130173 · NIGMS · UNIVERSITY OF CENTRAL FLORIDA · PI DAVIDSON, VICTOR L · 2019 to 2023
$1.8M
NIGMS NIH HHS R35 GM130173NIGMS NIH HHS R35 GM136437NIGMS NIH HHS R35GM136437
6 · The paper itself

Abstract

Amicyanin is a type 1 copper protein with a single tryptophan residue. Using genetic code expansion, the tryptophan was selectively replaced with the unnatural amino acid, 5-hydroxytryptophan (5-HTP). The 5-HTP substituted amicyanin exhibited absorbance at 300-320 nm, characteristic of 5-HTP and not seen in native amicyanin. The fluorescence emission maximum in 5-HTP substituted amicyanin is redshifted from 318 nm in native amicyanin to 331 nm and to 348 nm in the unfolded protein. The fluorescence quantum yield of 5-HTP substituted amicyanin mutant was much less than that of native amicyanin. Differences in intrinsic fluorescence are explained by differences in the excited states of tryptophan versus 5-HTP and the intraprotein environment. The substitution of tryptophan with 5-HTP did not affect the visible absorbance and redox potential of the copper, which is 10 Å away. In amicyanin and other cupredoxins, an unexplained quenching of the intrinsic fluorescence by the bound copper is observed. However, the fluorescence of 5-HTP substituted amicyanin is not quenched by the copper. It is shown that the mechanism of quenching in native amicyanin is Förster, or fluorescence, resonance energy transfer (FRET). This does not occur in 5-HTP substituted amicyanin because the fluorescence quantum yield is significantly lower and the red-shift of fluorescence emission maximum decreases overlap with the near UV absorbance of copper. Characterization of the distinct fluorescence properties of 5-HTP relative to tryptophan in amicyanin provides a basis for spectroscopic interrogation of the protein microenvironment using 5-HTP, and long-distance interactions with transition metals.

Indexed as

MetalloproteinsParacoccus denitrificans5-HydroxytryptophanAzurinBacterial ProteinsCopperEnergy TransferTryptophan5-HydroxytryptophanAzurinBacterial ProteinsCoppercupredoxinMetalloproteinsTryptophan5-hydroxytryptophanCopperCupredoxinFluorescence resonance energy transferGenetic code expansionTryptophan

Identifiers

PMID35696758
PMCPMC9753554
OpenAlexW4281612671

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.