Evidence map›Paper›PMID 35687490›Full record

ArticleBlood advances2022

Genomic characterization of lymphomas in patients with inborn errors of immunity.

Xiaofei Ye, Paul J Maglione, Claudia Wehr, Xiaobo Li, Yating Wang, Hassan Abolhassani, Elena Deripapa, Dongbing Liu, Stephan Borte, Likun Du and 17 more

Open access · goldAbstract read
In one paragraph

Article in Blood advances, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed, 2 pooled it
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 2 syntheses or guidelines pooled it, 36 citations in OpenAlex.

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  7. Navigating primary and secondary immunodeficiency intersections: how to find IEI hidden within SID.Allergy, asthma, and clinical immunology : official journal of the Canadian Society of Allergy and Clinical Immunology · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

27 authors at 10 institutions in 8 countries.

Xiaofei YeDepartment of Biosciences and Nutrition, Karolinska Institutet, Sweden.
Paul J MaglionePulmonary Center, Boston University School of Medicine, Boston, MA.
Claudia WehrDepartment of Medicine I, Medical Center, Faculty of Medicine, University of Freiburg, Freiburg, Germany.
Xiaobo LiBGI-Shenzhen, Shenzhen, China.ORCID 0000-0003-1040-2022
Yating WangDepartment of Biosciences and Nutrition, Karolinska Institutet, Sweden.
Hassan AbolhassaniDepartment of Biosciences and Nutrition, Karolinska Institutet, Sweden.ORCID 0000-0002-4838-0407
Elena DeripapaCenter for Pediatric Hematology, Oncology, Immunology, Moscow, Russia.
Dongbing LiuBGI-Shenzhen, Shenzhen, China.ORCID 0000-0003-2870-5187
Stephan BorteImmunodeficiency Center Leipzig at Hospital St. Georg Leipzig, Leipzig, Germany.
Likun DuDepartment of Biosciences and Nutrition, Karolinska Institutet, Sweden.
Hui WanDepartment of Biosciences and Nutrition, Karolinska Institutet, Sweden.
Andreas PlötnerInstitute of Pathology at Hospital St. Georg Leipzig, Leipzig, Germany.
Yvonne GiannoulaDepartment of Biosciences and Nutrition, Karolinska Institutet, Sweden.ORCID 0000-0003-4265-5411
Huai-Bin KoDivision of Allergy and Clinical Immunology, Icahn School of Medicine, Mount Sinai, New York, NY.ORCID 0000-0003-1062-2383
Yong HouBGI-Shenzhen, Shenzhen, China.
Shida ZhuBGI-Shenzhen, Shenzhen, China.
Jennifer K GrossmanDivision of Hematology and Hematologic Malignancies, Alberta Health Services, Calgary, Alberta, Canada.
Birgitta SanderDepartment of Laboratory Medicine, Karolinska Institutet, Sweden.
Bodo GrimbacherCenter for Chronic Immunodeficiency, Medical Center, Faculty of Medicine, University of Freiburg, Freiburg, Germany.ORCID 0000-0002-6897-6806
Lennart HammarströmDepartment of Biosciences and Nutrition, Karolinska Institutet, Sweden.
Alina FedorovaBelarusian Research Center for Pediatric Oncology, Hematology and Immunology, Minsk, Belarus.ORCID 0000-0002-1559-8223
Sergio D RosenzweigDepartment of Laboratory Medicine, Clinical Center, National Institutes of Health, Bethesda, MD.ORCID 0000-0002-5550-9678
Anna ShcherbinaCenter for Pediatric Hematology, Oncology, Immunology, Moscow, Russia.
Kui WuBGI-Shenzhen, Shenzhen, China.ORCID 0000-0002-6857-7231
Klaus WarnatzCenter for Chronic Immunodeficiency, Medical Center, Faculty of Medicine, University of Freiburg, Freiburg, Germany.ORCID 0000-0002-1172-865X
Charlotte Cunningham-RundlesDivision of Allergy and Clinical Immunology, Icahn School of Medicine, Mount Sinai, New York, NY.
Qiang Pan-HammarströmDepartment of Biosciences and Nutrition, Karolinska Institutet, Sweden.ORCID 0000-0003-1990-8804
Karolinska Institutet · SEBGI Group (China) · CNUniversity of Freiburg · DEIcahn School of Medicine at Mount Sinai · USKlinikum St. Georg · DENational Medical Research Center for Hematology · RUAlberta Health Services · CABelarusian Research Center For Pediatric Oncology and Hematology · BYBoston University · USNational Institutes of Health Clinical Center · US

Funding

Role of B cell activating factor in non-infectious complications of common variable immunodeficiencyK23AI137183 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI MAGLIONE, PAUL JOSEPH · 2018 to 2022
$945k
Mechanisms of immune dysregulation due to NFKB1 mutation in common variable immunodeficiencyR21AI151486 · NIAID · BOSTON UNIVERSITY MEDICAL CAMPUS · PI MAGLIONE, PAUL JOSEPH · 2020 to 2021
$454k
NIAID NIH HHS K23 AI137183NIAID NIH HHS R21 AI151486
6 · The paper itself

Abstract

Patients with inborn errors of immunity (IEI) have a higher risk of developing cancer, especially lymphoma. However, the molecular basis for IEI-related lymphoma is complex and remains elusive. Here, we perform an in-depth analysis of lymphoma genomes derived from 23 IEI patients. We identified and validated disease-causing or -associated germline mutations in 14 of 23 patients involving ATM, BACH2, BLM, CD70, G6PD, NBN, PIK3CD, PTEN, and TNFRSF13B. Furthermore, we profiled somatic mutations in the lymphoma genome and identified 8 genes that were mutated at a significantly higher level in IEI-associated diffuse large B-cell lymphomas (DLBCLs) than in non-IEI DLBCLs, such as BRCA2, NCOR1, KLF2, FAS, CCND3, and BRWD3. The latter, BRWD3, is furthermore preferentially mutated in tumors of a subgroup of activated phosphoinositide 3-kinase δ syndrome patients. We also identified 5 genomic mutational signatures, including 2 DNA repair deficiency-related signatures, in IEI-associated lymphomas and a strikingly high number of inter- and intrachromosomal structural variants in the tumor genome of a Bloom syndrome patient. In summary, our comprehensive genomic characterization of lymphomas derived from patients with rare genetic disorders expands our understanding of lymphomagenesis and provides new insights for targeted therapy.

Indexed as

Lymphoma, Large B-Cell, DiffusePhosphatidylinositol 3-KinasesBasic-Leucine Zipper Transcription FactorsGenomicsHumansPhosphatidylinositol 3-KinaseBasic-Leucine Zipper Transcription FactorsPhosphatidylinositol 3-KinasePhosphatidylinositol 3-Kinases

Identifiers

PMID35687490
PMCPMC9631701
OpenAlexW4282021509

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.