Evidence map›Paper›PMID 35686988›Full record

ArticleJournal of applied clinical medical physics2022

Machine learning for contour classification in TG-263 noncompliant databases.

David Livermore, Thomas Trappenberg, Alasdair Syme

Abstract read
In one paragraph

Article in Journal of applied clinical medical physics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

David LivermoreDepartment of Physics and Atmospheric Science, Dalhousie University, 6299 South St, Halifax, NS B3H 4R2, Canada.
Thomas TrappenbergFaculty of Computer Science, Dalhousie University, 6050 University Avenue, Halifax, NS B3H 4R2, Canada.
Alasdair SymeDepartment of Physics and Atmospheric Science, Dalhousie University, 6299 South St, Halifax, NS B3H 4R2, Canada.ORCID https://orcid.org/0000-0003-3173-0949

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A large volume of medical data are labeled using nonstandardized nomenclature. Although efforts have been made by the American Association of Physicists in Medicine (AAPM) to standardize nomenclature through Task Group 263 (TG-263), there remain noncompliant databases. This work aims to create an algorithm that can analyze anatomical contours in patients with head and neck cancer and classify them into TG-263 compliant nomenclature. To create an accurate algorithm capable of such classification, a combined approaching using both binary images of individual slices of anatomical contours themselves, as well as center of mass coordinates of the structures are input into a neural network. The center of mass coordinates were scaled using two normalization schemes, a simple linear normalization scheme agnostic of the patient anatomy, and an anatomical normalization scheme dependent on patient anatomy. The results of all of the individual slice classifications are then aggregated into a single classification by means of a voting algorithm. The total classification accuracy of the final algorithms was 97.6% mean accuracy per class for nonanatomically normalization scheme, and 97.9% mean accuracy per class for anatomically normalization scheme. The total accuracy was 99.0% (13 errors in 1302 structures) for the nonanatomically normalization scheme, and 98.3% (22 errors in 1302 structures) for the anatomically normalization scheme.

Indexed as

Head and Neck NeoplasmsMachine LearningAlgorithmsDatabases, FactualHumansNeural Networks, Computerimage classificationmachine learningstandardization

Identifiers

PMID35686988
PMCPMC9512347

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.