Evidence map›Paper›PMID 35685574›Full record

Observational studyInternational journal of clinical practice2022

Genomic Analysis of AZD1222 (ChAdOx1) Vaccine Breakthrough Infections in the City of Mumbai.

Arusha Shetty, Gaurav Chatterjee, Sweta Rajpal, Tuhina Srivastava, Nilesh Gardi, Sumeet Mirgh, Anant Gokarn, Sachin Punatar, Nitin Shetty, Amit Joshi and 18 more

Open access · goldAbstract readObservational Study
In one paragraph

Observational study in International journal of clinical practice, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed, 1 pooled it
0.1field-weighted citation impact, top 61% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 synthesis or guideline pooled it, 1 citations in OpenAlex.

  1. Pooled it
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

28 authors at 2 institutions in 1 country.

Arusha ShettyHaematopathology Laboratory, ACTREC, Tata Memorial Centre, Navi Mumbai, India.
Gaurav ChatterjeeHaematopathology Laboratory, ACTREC, Tata Memorial Centre, Navi Mumbai, India.ORCID https://orcid.org/0000-0002-6505-7898
Sweta RajpalHaematopathology Laboratory, ACTREC, Tata Memorial Centre, Navi Mumbai, India.ORCID https://orcid.org/0000-0001-6355-4674
Tuhina SrivastavaHaematopathology Laboratory, ACTREC, Tata Memorial Centre, Navi Mumbai, India.
Nilesh GardiHomi Bhabha National Institute (HBNI), Mumbai, India.
Sumeet MirghHomi Bhabha National Institute (HBNI), Mumbai, India.ORCID https://orcid.org/0000-0003-0642-2207
Anant GokarnHomi Bhabha National Institute (HBNI), Mumbai, India.
Sachin PunatarHomi Bhabha National Institute (HBNI), Mumbai, India.
Nitin ShettyHomi Bhabha National Institute (HBNI), Mumbai, India.ORCID https://orcid.org/0000-0002-6389-1678
Amit JoshiHomi Bhabha National Institute (HBNI), Mumbai, India.
Sudhir NairHomi Bhabha National Institute (HBNI), Mumbai, India.
Vedang MurthyHomi Bhabha National Institute (HBNI), Mumbai, India.ORCID https://orcid.org/0000-0001-6011-9319
Navin KhattryHomi Bhabha National Institute (HBNI), Mumbai, India.
Prashant TembhareHaematopathology Laboratory, ACTREC, Tata Memorial Centre, Navi Mumbai, India.ORCID https://orcid.org/0000-0002-9030-0415
Rajesh DikshitHomi Bhabha National Institute (HBNI), Mumbai, India.ORCID https://orcid.org/0000-0003-4830-0486
Pankaj ChaturvediHomi Bhabha National Institute (HBNI), Mumbai, India.ORCID https://orcid.org/0000-0002-3520-1342
Ashwini MoreDepartment of General Medicine, ACTREC, Tata Memorial Centre, Navi Mumbai, India.
Sujeet KamtalwarDepartment of General Medicine, ACTREC, Tata Memorial Centre, Navi Mumbai, India.
Preeti ChavanDepartment of Laboratory Medicine, ACTREC, Tata Memorial Centre, Navi Mumbai, India.
Vivek BhatHomi Bhabha National Institute (HBNI), Mumbai, India.
Amar PatilDepartment of General Medicine, ACTREC, Tata Memorial Centre, Navi Mumbai, India.
Sachin DhumalDepartment of General Medicine, ACTREC, Tata Memorial Centre, Navi Mumbai, India.
Prashant BhatDepartment of General Medicine, ACTREC, Tata Memorial Centre, Navi Mumbai, India.
Papagudi SubramanianHaematopathology Laboratory, ACTREC, Tata Memorial Centre, Navi Mumbai, India.
Sumeet GujralHaematopathology Laboratory, ACTREC, Tata Memorial Centre, Navi Mumbai, India.
Rajendra BadweHomi Bhabha National Institute (HBNI), Mumbai, India.
Nikhil PatkarHaematopathology Laboratory, ACTREC, Tata Memorial Centre, Navi Mumbai, India.ORCID https://orcid.org/0000-0001-9234-2857
Sudeep GuptaHomi Bhabha National Institute (HBNI), Mumbai, India.ORCID https://orcid.org/0000-0002-6742-6378
Homi Bhabha National Institute · INTata Memorial Hospital · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: This manuscript describes the genetic features of SARS-CoV-2 mutations, prevalent phylogenetic lineages, and the disease severity amongst COVID-19-vaccinated individuals in a tertiary cancer hospital during the second wave of the pandemic in Mumbai, India. Methods: This observational study included 159 COVID-19 patients during the second wave of the pandemic from 17 Results: Kappa B.1.1671.1 and delta B.1.617.2 variants contributed to an overwhelming majority of sequenced genomes (unvaccinated: 40/92, 43.5% kappa, 46/92, 50% delta; dose 1: 14/29, 48.3% kappa, 15/29, 51.7% delta; and dose 2: 23/38, 60.5% kappa, 14/38 36.8% delta). The proportion of the kappa and delta variants did not differ significantly across the unvaccinated, dose 1, and dose 2 groups ( Conclusions: Sequencing analysis of SARS-COV-2 genomes from Mumbai during the second wave of COVID-19 suggests the prevalence of the kappa B.1.617.1 and the delta B.1.627.2 variants among both vaccinated and unvaccinated individuals. Continued evaluation of genomic sequencing data from breakthrough COVID-19 is necessary for monitoring the properties of evolving variants of concern and formulating appropriate immune response boosting and therapeutic strategies.

Indexed as

COVID-19SARS-CoV-2ChAdOx1 nCoV-19GenomicsHumansPhylogenyChAdOx1 nCoV-19

Identifiers

PMID35685574
PMCPMC9159196
OpenAlexW4210968623

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.