Evidence map›Paper›PMID 35680389›Full record

ArticleAnnals of the rheumatic diseases2022

Interferon-α-mediated therapeutic resistance in early rheumatoid arthritis implicates epigenetic reprogramming.

Faye A H Cooles, Jessica Tarn, Dennis W Lendrem, Najib Naamane, Chung Ma Lin, Ben Millar, Nicola J Maney, Amy E Anderson, Nishanthi Thalayasingam, Julie Diboll and 12 more

Open access · hybridAbstract read
In one paragraph

Article in Annals of the rheumatic diseases, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
8.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 60 citations in OpenAlex.

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  15. DualFrontiers in immunology · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 6 institutions in 2 countries.

Faye A H CoolesTranslational and Clinical Research Institute, Newcastle University, Newcastle Upon Tyne, UK faye.cooles@ncl.ac.uk.ORCID http://orcid.org/0000-0002-8529-3337
Jessica TarnTranslational and Clinical Research Institute, Newcastle University, Newcastle Upon Tyne, UK.ORCID http://orcid.org/0000-0003-0083-8543
Dennis W LendremTranslational and Clinical Research Institute, Newcastle University, Newcastle Upon Tyne, UK.ORCID http://orcid.org/0000-0001-6268-5509
Najib NaamaneTranslational and Clinical Research Institute, Newcastle University, Newcastle Upon Tyne, UK.
Chung Ma LinTranslational and Clinical Research Institute, Newcastle University, Newcastle Upon Tyne, UK.
Ben MillarTranslational and Clinical Research Institute, Newcastle University, Newcastle Upon Tyne, UK.
Nicola J ManeyTranslational and Clinical Research Institute, Newcastle University, Newcastle Upon Tyne, UK.ORCID http://orcid.org/0000-0002-6079-2914
Amy E AndersonTranslational and Clinical Research Institute, Newcastle University, Newcastle Upon Tyne, UK.
Nishanthi ThalayasingamTranslational and Clinical Research Institute, Newcastle University, Newcastle Upon Tyne, UK.
Julie DibollTranslational and Clinical Research Institute, Newcastle University, Newcastle Upon Tyne, UK.
Vincent BondetLaboratory of Dendritic Cell Immunobiology, Institut Pasteur, Paris, France.
Darragh DuffyLaboratory of Dendritic Cell Immunobiology, Institut Pasteur, Paris, France.
Michael R BarnesCentre for Translational Bioinformatics, William Harvey Research Institute, London, UK.
Graham R SmithBioinformatics Support Unit, Newcastle University Faculty of Medical Sciences, Newcastle Upon Tyne, UK.
Sandra NgCentre for Translational Bioinformatics, William Harvey Research Institute, London, UK.
David WatsonDepartment of Statistical Science, University College London, London, UK.
Rafael HenkinCentre for Translational Bioinformatics, William Harvey Research Institute, London, UK.
Andrew P CopeAcademic Department of Rheumatology, King's College London, London, UK.
Louise N ReynardNewcastle University Biosciences Institute, Newcastle University, Newcastle Upon Tyne, UK.
Arthur G PrattTranslational and Clinical Research Institute, Newcastle University, Newcastle Upon Tyne, UK.ORCID http://orcid.org/0000-0002-9909-8209
RA-MAP Consortium
John D IsaacsTranslational and Clinical Research Institute, Newcastle University, Newcastle Upon Tyne, UK.ORCID http://orcid.org/0000-0002-6103-7056
Newcastle University · GBWilliam Harvey Research Institute · GBFreeman Hospital · GBInstitut Pasteur · FRKing's College London · GBUniversity College London · GB

Funding

Medical Research Council G1001518Medical Research Council MR/K015346/1Medical Research Council MR/P020941/1Medical Research Council MR/R013926/1Wellcome Trust
6 · The paper itself

Abstract

objectivesAn interferon (IFN) gene signature (IGS) is present in approximately 50% of early, treatment naive rheumatoid arthritis (eRA) patients where it has been shown to negatively impact initial response to treatment. We wished to validate this effect and explore potential mechanisms of action.

methodsIn a multicentre inception cohort of eRA patients (n=191), we examined the whole blood IGS (

resultsWe reproduced our previous findings demonstrating a raised baseline IGS. We additionally showed, for the first time, that the IGS in eRA reflects circulating IFN-α protein. Paired longitudinal analysis demonstrated a significant reduction between baseline and 6-month IGS and IFN-α levels (p<0.0001 for both). Despite this fall, a raised baseline IGS predicted worse 6-month clinical outcomes such as increased disease activity score (DAS-28, p=0.025) and lower likelihood of a good EULAR clinical response (p=0.034), which was independent of other conventional predictors of disease activity and clinical response. Molecular analysis of CD4+ T cells and CD19+ B cells demonstrated differentially methylated CPG sites and dysregulated expression of disease relevant genes, including

conclusionsOur data suggest that, in eRA, IFN-α can cause a sustained, epigenetically mediated, pathogenic increase in lymphocyte activation and proliferation, and that the IGS is, therefore, a robust prognostic biomarker. Its persistent harmful effects provide a rationale for the initial therapeutic targeting of IFN-α in selected patients with eRA.

Indexed as

antirheumatic agentsarthritis, rheumatoidimmune system diseasesinflammation

Identifiers

PMID35680389
PMCPMC9380486
OpenAlexW4282926027

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.