Evidence map›Paper›PMID 35680011›Full record

ArticleGenomics2022

First report on genome wide association study in western Indian population reveals host genetic factors for COVID-19 severity and outcome.

Ramesh Pandit, Indra Singh, Afzal Ansari, Janvi Raval, Zarna Patel, Raghav Dixit, Pranay Shah, Kamlesh Upadhyay, Naresh Chauhan, Kairavi Desai and 4 more

Abstract read
In one paragraph

Article in Genomics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Genetic susceptibility to severe COVID-19.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Ramesh PanditGujarat Biotechnology Research Centre (GBRC), Department of Science and Technology (Government of Gujarat), Gandhinagar, Gujarat 382011, India.
Indra SinghGujarat Biotechnology Research Centre (GBRC), Department of Science and Technology (Government of Gujarat), Gandhinagar, Gujarat 382011, India.
Afzal AnsariGujarat Biotechnology Research Centre (GBRC), Department of Science and Technology (Government of Gujarat), Gandhinagar, Gujarat 382011, India.
Janvi RavalGujarat Biotechnology Research Centre (GBRC), Department of Science and Technology (Government of Gujarat), Gandhinagar, Gujarat 382011, India.
Zarna PatelGujarat Biotechnology Research Centre (GBRC), Department of Science and Technology (Government of Gujarat), Gandhinagar, Gujarat 382011, India.
Raghav DixitCommissionerate of Health Medical Services and Medical Education Gandhinagar, Gujarat 382010, India.
Pranay ShahDepartment of Microbiology, B.J. Medical College and Civil hospital, Institute of Medical Post-Graduate Studies and Research, Ahmedabad, Gujarat 380016, India.
Kamlesh UpadhyayDepartment of Medicine, B.J. Medical College and Civil hospital, Institute of Medical Post-Graduate Studies and Research, Ahmedabad, Gujarat 380016, India.
Naresh ChauhanDepartment of Community Medicine, Government Medical College, Surat, Gujarat 395001, India.
Kairavi DesaiDepartment of Microbiology, Government Medical College, Bhavnagar, Gujarat 364001, India.
Meenakshi ShahDepartment of General Medicine, GMERS Medical College & Hospital, Gotri, Vadodara, Gujarat 390021, India.
Bhavesh ModiDepartment of Community Medicine, GMERS Medical College, Gandhinagar, Gujarat 382012, India.
Madhvi JoshiGujarat Biotechnology Research Centre (GBRC), Department of Science and Technology (Government of Gujarat), Gandhinagar, Gujarat 382011, India. Electronic address: madhvimicrobio@gmail.com.
Chaitanya JoshiGujarat Biotechnology Research Centre (GBRC), Department of Science and Technology (Government of Gujarat), Gandhinagar, Gujarat 382011, India. Electronic address: director@gbrc.res.in.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Different human races across the globe responded in a different way to the SARS-CoV-2 infection leading to different disease severity. Therefore, it is anticipated that host genetic factors have a straight association with the COVID-19. We identified a total 6, 7, and 6 genomic loci for deceased-recovered, asymptomatic-recovered, and deceased-asymptomatic group comparison, respectively. Unfavourable alleles of the markers nearby the genes which are associated with lung and heart diseases such as Tumor necrosis factor superfamily (TNFSF4&18), showed noteworthy association with the disease severity and outcome for the COVID-19 patients in the western Indian population. The markers found with significant association with disease prognosis or recovery are of value in determining the individual's response to SARS-CoV-2 infection and can be used for the risk prediction in COVID-19. Besides, GWAS study in other populations from India may help to strengthen the outcome of this study.

Indexed as

COVID-19Genome-Wide Association StudyAllelesAsian PeopleHumansIndiaOX40 LigandSARS-CoV-2Tumor Necrosis FactorsOX40 LigandTNFSF18 protein, humanTNFSF4 protein, humanTumor Necrosis FactorsCOVID-19Genome wide association (GWAS)Host genetic factorSARS-CoV-2

Identifiers

PMID35680011
PMCPMC9169419

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.