Evidence map›Paper›PMID 35679413›Full record

ArticleScience (New York, N.Y.)2022

Robust variation in infant gut microbiome assembly across a spectrum of lifestyles.

Matthew R Olm, Dylan Dahan, Matthew M Carter, Bryan D Merrill, Feiqiao B Yu, Sunit Jain, Xiandong Meng, Surya Tripathi, Hannah Wastyk, Norma Neff and 4 more

Abstract read
In one paragraph

Article in Science (New York, N.Y.), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 120 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
120citing papers in PubMed, 3 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

120 citing papers in PubMed, 3 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Trial
  5. Trial
  6. Observational
  7. Article
  8. Review
  9. Article
  10. Early-life colonization withScience (New York, N.Y.) · 2026
    Article
  11. Article
  12. Article
  13. Review
  14. Review
  15. Article
  16. ZipStrain Enables Rapid and Precise Strain-Resolved Metagenomics.bioRxiv : the preprint server for biology · 2026
    Article
  17. Review
  18. Article
  19. Article
  20. Article

60 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Matthew R Olm *Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA, USA.ORCID 0000-0001-5540-350X
Dylan Dahan *Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA, USA.
Matthew M CarterDepartment of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA, USA.ORCID 0000-0002-0077-938X
Bryan D MerrillDepartment of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA, USA.ORCID 0000-0002-9967-5539
Feiqiao B YuChan Zuckerberg Biohub, San Francisco, CA, USA.ORCID 0000-0003-3416-3046
Sunit JainChan Zuckerberg Biohub, San Francisco, CA, USA.ORCID 0000-0002-5888-3702
Xiandong MengChEM-H Institute, Stanford University, Stanford, CA 94305, USA.
Surya TripathiDepartment of Plant and Microbial Biology, University of California, Berkeley, Berkeley, CA, USA.
Hannah WastykDepartment of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA, USA.
Norma NeffChan Zuckerberg Biohub, San Francisco, CA, USA.
Susan HolmesDepartment of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA, USA.ORCID 0000-0002-2208-8168
Erica D SonnenburgDepartment of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA, USA.ORCID 0000-0001-8379-005X
Aashish R JhaGenetic Heritage Group, Program in Biology, New York University Abu Dhabi, Abu Dhabi,United Arab Emirates.ORCID 0000-0003-3227-1086
Justin L SonnenburgDepartment of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA, USA.ORCID 0000-0003-2299-6817

Funding

MOLECULAR BASIS OF HOST-PARASITE INTERACTIONT32AI007328 · NIAID · STANFORD UNIVERSITY · PI JUSTIN L SONNENBURG · 1987 to 2026
$11.9M
Impact of Diet on Intestinal Microbiota-Host DynamicsR01DK085025 · NIDDK · STANFORD UNIVERSITY · PI JUSTIN L SONNENBURG · 2010 to 2026
$6.4M
Defining and Reconstructing the Human Ancestral MicrobiomeDP1AT009892 · NCCIH · STANFORD UNIVERSITY · PI SONNENBURG, JUSTIN L · 2017 to 2021
$5.5M
Understanding mechanisms by which microbial strains and metabolites in fermented foods decrease systemic inflammationF32DK128865 · NIDDK · STANFORD UNIVERSITY · PI OLM, MATTHEW RAYMOND · 2021 to 2023
$186k
NCCIH NIH HHS DP1 AT009892NIAID NIH HHS T32 AI007328NIDDK NIH HHS F32 DK128865NIDDK NIH HHS R01 DK085025
6 · The paper itself

Abstract

Infant microbiome assembly has been intensely studied in infants from industrialized nations, but little is known about this process in nonindustrialized populations. We deeply sequenced infant stool samples from the Hadza hunter-gatherers of Tanzania and analyzed them in a global meta-analysis. Infant microbiomes develop along lifestyle-associated trajectories, with more than 20% of genomes detected in the Hadza infant gut representing novel species. Industrialized infants-even those who are breastfed-have microbiomes characterized by a paucity of

Indexed as

Bifidobacterium longum subspecies infantisDeveloping CountriesGastrointestinal MicrobiomeLife StyleFecesFemaleGenome, BacterialHigh-Throughput Nucleotide SequencingHumansInfantMilk, HumanTanzania

Identifiers

PMID35679413
PMCPMC9894631

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.