Evidence map›Paper›PMID 35678683›Full record

ArticleCurrent issues in molecular biology2022

The Search for Cancer Biomarkers: Assessing the Distribution of INDEL Markers in Different Genetic Ancestries.

Roberta B Andrade, Giovanna C Cavalcante, Marcos A T Amador, Fabiano Cordeiro Moreira, André S Khayat, Paulo P Assumpção, Ândrea Ribeiro-Dos-Santos, Ney P C Santos, Sidney Santos

Open access · goldAbstract read
In one paragraph

Article in Current issues in molecular biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.2field-weighted citation impact, top 53% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Molecules at Play in Cancer.Current issues in molecular biology · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Roberta B AndradeCenter of Oncology Research, Graduate Program in Oncology and Medical Sciences, Federal University of Pará, Belém 66073-005, Brazil.
Giovanna C CavalcanteLaboratory of Human and Medical Genetics, Graduate Program in Genetics and Molecular Biology, Federal University of Pará, Belém 66075-110, Brazil.ORCID 0000-0001-9814-4819
Marcos A T AmadorLaboratory of Human and Medical Genetics, Graduate Program in Genetics and Molecular Biology, Federal University of Pará, Belém 66075-110, Brazil.
Fabiano Cordeiro MoreiraCenter of Oncology Research, Graduate Program in Oncology and Medical Sciences, Federal University of Pará, Belém 66073-005, Brazil.ORCID 0000-0002-2799-3546
André S KhayatCenter of Oncology Research, Graduate Program in Oncology and Medical Sciences, Federal University of Pará, Belém 66073-005, Brazil.ORCID 0000-0002-3451-6369
Paulo P AssumpçãoCenter of Oncology Research, Graduate Program in Oncology and Medical Sciences, Federal University of Pará, Belém 66073-005, Brazil.
Ândrea Ribeiro-Dos-SantosCenter of Oncology Research, Graduate Program in Oncology and Medical Sciences, Federal University of Pará, Belém 66073-005, Brazil.ORCID 0000-0001-7001-1483
Ney P C SantosCenter of Oncology Research, Graduate Program in Oncology and Medical Sciences, Federal University of Pará, Belém 66073-005, Brazil.
Sidney SantosCenter of Oncology Research, Graduate Program in Oncology and Medical Sciences, Federal University of Pará, Belém 66073-005, Brazil.ORCID 0000-0002-8622-9417
Universidade Federal do Pará · BR

Funding

Coordenação de Aperfeicoamento de Pessoal de Nível Superior 3381/2013
6 · The paper itself

Abstract

Cancer is a multifactorial group of diseases, being highly incident and one of the leading causes of death worldwide. In Brazil, there is a great variation in cancer incidence and impact among the different geographic regions, partly due to the genetic heterogeneity of the population in this country, composed mainly by European (EUR), Native American (NAM), African (AFR), and Asian (ASN) ancestries. Among different populations, genetic markers commonly present diverse allelic frequencies, but in admixed populations, such as the Brazilian population, data is still limited, which is an issue that might influence cancer incidence. Therefore, we analyzed the allelic and genotypic distribution of 12 INDEL polymorphisms of interest in populations from the five Brazilian geographic regions and in populations representing EUR, NAM, AFR, and ASN, as well as tissue expression in silico. Genotypes were obtained by multiplex PCR and the statistical analyses were done using R, while data of tissue expression for each marker was extracted from GTEx portal. We highlight that all analyzed markers presented statistical differences in at least one of the population comparisons, and that we found 39 tissues to be differentially expressed depending on the genotype. Here, we point out the differences in genotype distribution and gene expression of potential biomarkers for risk of cancer development and we reinforce the importance of this type of study in populations with different genetic backgrounds.

Indexed as

Amazonbiomarkerscancergenetic ancestryINDEL

Identifiers

PMID35678683
PMCPMC9164054
OpenAlexW4280624494

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.