Evidence map›Paper›PMID 35677560›Full record

ArticleFrontiers in genetics2022

RNA-Seq Analysis of the Growth Hormone Transgenic Female Triploid Atlantic Salmon (

Eric H Ignatz, Tiago S Hori, Surendra Kumar, Tillmann J Benfey, Laura M Braden, C Dawn Runighan, Jillian D Westcott, Matthew L Rise

Open access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Frontiers in genetics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Eric H IgnatzDepartment of Ocean Sciences, Memorial University of Newfoundland and Labrador, St. John's, NL, Canada.
Tiago S HoriAtlantic Aqua Farms Ltd., Charlottetown, PE, Canada.
Surendra KumarDepartment of Ocean Sciences, Memorial University of Newfoundland and Labrador, St. John's, NL, Canada.
Tillmann J BenfeyDepartment of Biology, University of New Brunswick, Fredericton, NB, Canada.
Laura M BradenAquaBounty Canada, Inc., Souris, PE, Canada.
C Dawn RunighanAquaBounty Canada, Inc., Souris, PE, Canada.
Jillian D WestcottFisheries and Marine Institute, Memorial University of Newfoundland and Labrador, St. John's, NL, Canada.
Matthew L RiseDepartment of Ocean Sciences, Memorial University of Newfoundland and Labrador, St. John's, NL, Canada.
Memorial University of Newfoundland · CAUniversity of New Brunswick · CAUniversity of Prince Edward Island · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

This study examined the impact of rearing temperature (10.5, 13.5 or 16.5°C) on the hepatic transcriptome of AquAdvantage Salmon (growth hormone transgenic female triploid Atlantic salmon) at an average weight of 800 g. Six stranded PE libraries were Illumina-sequenced from each temperature group, resulting in an average of over 100 M raw reads per individual fish. RNA-sequencing (RNA-seq) results showed the greatest difference in the number of differentially expressed transcripts (1750 DETs), as revealed by both DESeq2 and edgeR (

Indexed as

Atlantic salmonmetabolismRNA-seqtranscriptomicstransgenictriploid

Identifiers

PMID35677560
PMCPMC9168996
OpenAlexW4281286481

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.