Evidence map›Paper›PMID 35677240›Full record

ArticleFrontiers in plant science2022

Transcriptome-Wide Characterization of Alkaloids and Chlorophyll Biosynthesis in Lotus Plumule.

Heng Sun, Heyun Song, Xianbao Deng, Juan Liu, Dong Yang, Minghua Zhang, Yuxin Wang, Jia Xin, Lin Chen, Yanling Liu and 1 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in plant science, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.9field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 1 country.

Heng SunAquatic Plant Research Center, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, China.
Heyun SongAquatic Plant Research Center, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, China.
Xianbao DengAquatic Plant Research Center, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, China.
Juan LiuAquatic Plant Research Center, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, China.
Dong YangAquatic Plant Research Center, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, China.
Minghua ZhangAquatic Plant Research Center, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, China.
Yuxin WangAquatic Plant Research Center, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, China.
Jia XinAquatic Plant Research Center, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, China.
Lin ChenCenter of Applied Biotechnology, Wuhan Institute of Bioengineering, Wuhan, China.
Yanling LiuAquatic Plant Research Center, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, China.
Mei YangAquatic Plant Research Center, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, China.
Wuhan Botanical Garden · CNUniversity of Chinese Academy of Sciences · CNChinese Academy of Sciences · CNWuhan Institute of Bioengineering · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Lotus plumule is a green tissue in the middle of seeds that predominantly accumulates bisbenzylisoquinoline alkaloids (bis-BIAs) and chlorophyll (Chl). However, the biosynthetic mechanisms of these two metabolites remain largely unknown in lotus. This study used physiological and RNA sequencing (RNA-Seq) approaches to characterize the development and molecular mechanisms of bis-BIAs and Chl biosynthesis in lotus plumule. Physiological analysis revealed that exponential plumule growth occurred between 9 and 15 days after pollination (DAP), which coincided with the onset of bis-BIAs biosynthesis and its subsequent rapid accumulation. Transcriptome analysis of lotus plumule identified a total of 8,725 differentially expressed genes (DEGs), representing ~27.7% of all transcripts in the lotus genome. Sixteen structural DEGs, potentially associated with bis-BIAs biosynthesis, were identified. Of these, 12 encoded

Indexed as

biosynthetic mechanismbisbenzylisoquinoline alkaloidschlorophylllotus plumuletranscriptome analysis

Identifiers

PMID35677240
PMCPMC9168470
OpenAlexW4281285976

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.