Evidence map›Paper›PMID 35676274›Full record

ArticleNature communications2022

Taf2 mediates DNA binding of Taf14.

Brianna J Klein, Jordan T Feigerle, Jibo Zhang, Christopher C Ebmeier, Lixin Fan, Rohit K Singh, Wesley W Wang, Lauren R Schmitt, Thomas Lee, Kirk C Hansen and 5 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.8field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Review
  3. A multivalent engagement of ENL with MOZ.Nature structural & molecular biology · 2025
    Article
  4. Article
  5. Article
  6. MLL4 binds TET3.Structure (London, England : 1993) · 2024
    Article
  7. Article
  8. Differences and similarities in recognition of co-factors by Taf14.Biochimica et biophysica acta. Gene regulatory mechanisms · 2023
    Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 8 institutions in 1 country.

Brianna J KleinDepartment of Pharmacology, University of Colorado School of Medicine, Aurora, CO, 80045, USA.
Jordan T FeigerleDepartment of Structural Biology, Stanford University, Stanford, CA, 94305, USA.
Jibo ZhangDepartment of Biochemistry & Biophysics, The University of North Carolina School of Medicine, Chapel Hill, NC, 27599, USA.
Christopher C EbmeierDepartment of Biochemistry, University of Colorado, Boulder, CO, 80303, USA.ORCID 0000-0001-7940-6190
Lixin FanBasic Science Program, Frederick National Laboratory for Cancer Research, SAXS Core Facility of the National Cancer Institute, Frederick, MD, 21702, USA.
Rohit K SinghDepartment of Pharmacology, University of Colorado School of Medicine, Aurora, CO, 80045, USA.
Wesley W WangDepartment of Chemistry, Texas A&M University, College Station, TX, 77843, USA.
Lauren R SchmittDepartment of Biochemistry and Molecular Genetics, University of Colorado School of Medicine, Aurora, CO, 80045, USA.
Thomas LeeBasic Science Program, Frederick National Laboratory for Cancer Research, SAXS Core Facility of the National Cancer Institute, Frederick, MD, 21702, USA.
Kirk C HansenDepartment of Biochemistry and Molecular Genetics, University of Colorado School of Medicine, Aurora, CO, 80045, USA.
Wenshe R LiuDepartment of Chemistry, Texas A&M University, College Station, TX, 77843, USA.ORCID 0000-0002-7078-6534
Yun-Xing WangProtein-Nucleic Acid Interaction Section, Structural Biophysics Laboratory, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Frederick, MD, 27102, USA.ORCID 0000-0002-2175-0148
Brian D StrahlDepartment of Biochemistry & Biophysics, The University of North Carolina School of Medicine, Chapel Hill, NC, 27599, USA.ORCID 0000-0002-4947-6259
P Anthony WeilDepartment of Molecular Physiology and Biophysics, Vanderbilt University School of Medicine, Nashville, TN, 37232, USA.
Tatiana G KutateladzeDepartment of Pharmacology, University of Colorado School of Medicine, Aurora, CO, 80045, USA. tatiana.kutateladze@cuanschutz.edu.ORCID 0000-0001-7375-6990
University of Colorado Denver · USFrederick National Laboratory for Cancer Research · USTexas A&M University · USUniversity of North Carolina at Chapel Hill · USVanderbilt University · USNational Institutes of Health · USUniversity of Colorado Anschutz Medical Campus · USUniversity of Colorado Boulder · US

Funding

STRUCTURE OF RNA POLYMERASE IIR01GM049985 · NIGMS · STANFORD UNIVERSITY · PI PUGLISI, JOSEPH D · 1993 to 2020
$10.2M
SAXS FacilityZICBC011535 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI WANG, YUN XING M · 2014 to 2025
$7.5M
Mechanisms of chromatin and transcriptional regulationR35GM126900 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Brian D Strahl · 2018 to 2026
$5.5M
Three-Dimensional Structure of Eukaryote ChromosomesR01DK121366 · NIDDK · STANFORD UNIVERSITY · PI LEVITT, MICHAEL · 2018 to 2021
$4.8M
Targeting acetylated histone H4 by MLL4R01AG067664 · NIA · UNIVERSITY OF COLORADO DENVER · PI KUTATELADZE, TATIANA G · 2021 to 2025
$2.1M
Molecular analysis of ASH1LR01CA252707 · NCI · UNIVERSITY OF COLORADO DENVER · PI TATIANA G KUTATELADZE · 2020 to 2026
$1.9M
The role of JADE in HBO complexesR01HL151334 · NHLBI · UNIVERSITY OF COLORADO DENVER · PI KUTATELADZE, TATIANA G · 2020 to 2023
$1.8M
Develop General Methods for the Synthesis of Proteins with Posttranslational Lysine ModificationsR01GM127575 · NIGMS · TEXAS A&M UNIVERSITY · PI LIU, WENSHE RAY · 2019 to 2022
$1.4M
Epigenetic mechanisms for regulation of p300R01GM135671 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI KUTATELADZE, TATIANA G · 2020 to 2023
$1.4M
Interdomain crosstalk in MORC3R01GM125195 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI KUTATELADZE, TATIANA G · 2017 to 2021
$1.3M
Quadrupole-Orbitrap Mass SpectrometerS10OD021641 · OD · UNIVERSITY OF COLORADO DENVER · PI HANSEN, KIRK C · 2017 to 2017
$600k
Targeting acetylated histone H4 by MLL4R56AG067664 · NIA · UNIVERSITY OF COLORADO DENVER · PI KUTATELADZE, TATIANA G · 2020 to 2020
$512k
NCI NIH HHS R01 CA252707NHLBI NIH HHS R01 HL151334NIA NIH HHS R01 AG067664NIA NIH HHS R56 AG067664NIDDK NIH HHS R01 DK121366NIGMS NIH HHS R01 GM049985NIGMS NIH HHS R01 GM125195NIGMS NIH HHS R01 GM127575NIGMS NIH HHS R01 GM135671NIGMS NIH HHS R35 GM126900NIH HHS S10 OD021641
6 · The paper itself

Abstract

The assembly and function of the yeast general transcription factor TFIID complex requires specific contacts between its Taf14 and Taf2 subunits, however, the mechanism underlying these contacts remains unclear. Here, we determined the molecular and structural basis by which the YEATS and ET domains of Taf14 bind to the C-terminal tail of Taf2 and identified a unique DNA-binding activity of the linker region connecting the two domains. We show that in the absence of ligands the linker region of Taf14 is occluded by the surrounding domains, and therefore the DNA binding function of Taf14 is autoinhibited. Binding of Taf2 promotes a conformational rearrangement in Taf14, resulting in a release of the linker for the engagement with DNA and the nucleosome. Genetic in vivo data indicate that the association of Taf14 with both Taf2 and DNA is essential for transcriptional regulation. Our findings provide a basis for deciphering the role of individual TFIID subunits in mediating gene transcription.

Indexed as

Saccharomyces cerevisiae ProteinsTATA-Binding Protein Associated FactorsTranscription Factor TFIIDDNAGene Expression RegulationSaccharomyces cerevisiaeDNASaccharomyces cerevisiae ProteinsTAF14 protein, S cerevisiaeTAF2 protein, S cerevisiaeTATA-Binding Protein Associated FactorsTranscription Factor TFIID

Identifiers

PMID35676274
PMCPMC9177701
OpenAlexW4281669998

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.