Evidence map›Paper›PMID 35672557›Full record

ArticlePhotosynthesis research2023

Quantum chemical elucidation of a sevenfold symmetric bacterial antenna complex.

Lorenzo Cupellini, Pu Qian, Tu C Nguyen-Phan, Alastair T Gardiner, Richard J Cogdell

Abstract read
In one paragraph

Article in Photosynthesis research, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Trade-offs between light absorption and energy transfer in a marine light-harvesting complex 2.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  3. Probing the Dual Role of CaBiomolecules · 2025
    Article
  4. Tuning by Hydrogen Bonding in Photosynthesis.The journal of physical chemistry. B · 2024
    Article
  5. Spectral changes of light-harvesting complex 2 lacking B800 bacteriochlorophyll a under neutral pH conditions.Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Lorenzo CupelliniDepartment of Chemistry and Industrial Chemistry, University of Pisa, 56124, Pisa, Italy. lorenzo.cupellini@unipi.it.ORCID http://orcid.org/0000-0003-0848-2908
Pu QianMaterials and Structure Analysis, Thermofisher Scientific, Achtseweg Nordic 5, 5651 GTC, Eindhoven, The Netherlands.
Tu C Nguyen-PhanInstitute of Molecular, Cell and Systems Biology, University of Glasgow, Glasgow, G12 8QQ, UK.
Alastair T GardinerLaboratory of Anoxygenic Phototrophs, Centre Algatech, Novohradská 237 - Opatovický mlýn, 379 01, Třeboň, Czech Republic.
Richard J CogdellInstitute of Molecular, Cell and Systems Biology, University of Glasgow, Glasgow, G12 8QQ, UK.ORCID http://orcid.org/0000-0003-2119-6607

Funding

Biotechnology and Biological Sciences Research Council BB/N016734/1HORIZON EUROPE European Research Council ERC-AdG-786714
6 · The paper itself

Abstract

The light-harvesting complex 2 (LH2) of purple bacteria is one of the most studied photosynthetic antenna complexes. Its symmetric structure and ring-like bacteriochlorophyll arrangement make it an ideal system for theoreticians and spectroscopists. LH2 complexes from most bacterial species are thought to have eightfold or ninefold symmetry, but recently a sevenfold symmetric LH2 structure from the bacterium Mch. purpuratum was solved by Cryo-Electron microscopy. This LH2 also possesses unique near-infrared absorption and circular dichroism (CD) spectral properties. Here we use an atomistic strategy to elucidate the spectral properties of Mch. purpuratum LH2 and understand the differences with the most commonly studied LH2 from Rbl. acidophilus. Our strategy exploits a combination of molecular dynamics simulations, multiscale polarizable quantum mechanics/molecular mechanics calculations, and lineshape simulations. Our calculations reveal that the spectral properties of LH2 complexes are tuned by site energies and exciton couplings, which in turn depend on the structural fluctuations of the bacteriochlorophylls. Our strategy proves effective in reproducing the absorption and CD spectra of the two LH2 complexes, and in uncovering the origin of their differences. This work proves that it is possible to obtain insight into the spectral tuning strategies of purple bacteria by quantitatively simulating the spectral properties of their antenna complexes.

Indexed as

Light-Harvesting Protein ComplexesPhotosynthetic Reaction Center Complex ProteinsBacteriochlorophyllsCryoelectron MicroscopyMolecular Dynamics SimulationProteobacteriaBacteriochlorophyllsLight-Harvesting Protein ComplexesPhotosynthetic Reaction Center Complex ProteinsExcitonsLight-harvestingMolecular dynamicsPigment-protein complexQM/MMQuantum chemistry

Identifiers

PMID35672557
PMCPMC10070313

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.