Evidence map›Paper›PMID 35672440›Full record

ArticleScientific reports2022

Epidemiological investigation of swine Japanese encephalitis virus based on RT-RAA detection method.

Mincai Nie, Yuancheng Zhou, Fengqin Li, Huidan Deng, Mengxi Zhao, Yao Huang, Chaoyuan Jiang, Xiangang Sun, Zhiwen Xu, Ling Zhu

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 1 pooled it
3.8field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 1 synthesis or guideline pooled it, 16 citations in OpenAlex.

  1. Pooled it
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  8. Host Factor Rab4b PromotesMicroorganisms · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Mincai Nie *College of Veterinary Medicine, Sichuan Agricultural University, Chengdu, 611130, China.
Yuancheng Zhou *Livestock and Poultry Biological Products Key Laboratory of Sichuan Province, Sichuan Animal Science Academy, Chengdu, 610066, China.
Fengqin LiCollege of Veterinary Medicine, Sichuan Agricultural University, Chengdu, 611130, China.
Huidan DengCollege of Veterinary Medicine, Sichuan Agricultural University, Chengdu, 611130, China.
Mengxi ZhaoCollege of Veterinary Medicine, Sichuan Agricultural University, Chengdu, 611130, China.
Yao HuangCollege of Veterinary Medicine, Sichuan Agricultural University, Chengdu, 611130, China.
Chaoyuan JiangCollege of Veterinary Medicine, Sichuan Agricultural University, Chengdu, 611130, China.
Xiangang SunCollege of Veterinary Medicine, Sichuan Agricultural University, Chengdu, 611130, China.
Zhiwen XuCollege of Veterinary Medicine, Sichuan Agricultural University, Chengdu, 611130, China.
Ling ZhuCollege of Veterinary Medicine, Sichuan Agricultural University, Chengdu, 611130, China. abtczl72@126.com.
Sichuan Agricultural University · CNSichuan Animal Science Academy · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

JEV is one of the zoonotic pathogens that cause serious diseases in humans. JEV infection can cause abortion, mummified foetus and stillbirth in sows, orchitis and semen quality decline in boars, causing huge economic losses to pig industry. In order to investigate the epidemiology of JEV in pigs in Sichuan province, a rapid and efficient fluorescent Reverse transcription recombinase-aided amplification (RT-RAA) detection method was established. Aborted fetuses and testicular swollen boar samples were detected by RT-RAA in pigs in the mountain areas around Sichuan Basin, and the detection rate of JEV was 6.49%. The positive samples were identified as JEV GI strain and GIIIstrain by sequencing analysis. We analyzed the whole gene sequence of a positive sample for the GI virus. The Envelope Protein (E protein) phylogenetic tree analysis was far related to the Chinese vaccine strain SA14-14-2, and was most closely related to the JEV GI strains SH17M-07 and SD0810 isolated from China. The results showed that we established an efficient, accurate and sensitive method for clinical detection of JEV, and JEV GI strains were prevalent in Sichuan area. It provides reference for the prevention and control of JEV in Sichuan.

Indexed as

Encephalitis, JapaneseEncephalitis Virus, JapaneseSwine DiseasesAnimalsFemaleGenotypeMalePhylogenyPregnancySemen AnalysisSwine

Identifiers

PMID35672440
PMCPMC9172605
OpenAlexW4282049771

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.