Evidence map›Paper›PMID 35672425›Full record

ArticleScientific reports2022

Clinical exome sequencing for inherited retinal degenerations at a tertiary care center.

Mythily Ganapathi, Amanda Thomas-Wilson, Christie Buchovecky, Avinash Dharmadhikari, Subit Barua, Winston Lee, Merry Z C Ruan, Megan Soucy, Sara Ragi, Joy Tanaka and 6 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
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  5. The Specific Pathogenicity Pattern of the DifferentInternational journal of molecular sciences · 2025
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  12. Lipid nanoparticles for gene therapy in ocular diseases.Daru : journal of Faculty of Pharmacy, Tehran University of Medical Sciences · 2023
    Review
  13. Review
  14. A novel biallelic loss-of-function variant inCold Spring Harbor molecular case studies · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 3 institutions in 1 country.

Mythily Ganapathi *Laboratory of Personalized Genomic Medicine, Department of Pathology & Cell Biology, Columbia University Medical Center, New York, NY, USA.
Amanda Thomas-Wilson *Laboratory of Personalized Genomic Medicine, Department of Pathology & Cell Biology, Columbia University Medical Center, New York, NY, USA.
Christie BuchoveckyLaboratory of Personalized Genomic Medicine, Department of Pathology & Cell Biology, Columbia University Medical Center, New York, NY, USA.
Avinash DharmadhikariLaboratory of Personalized Genomic Medicine, Department of Pathology & Cell Biology, Columbia University Medical Center, New York, NY, USA.
Subit BaruaLaboratory of Personalized Genomic Medicine, Department of Pathology & Cell Biology, Columbia University Medical Center, New York, NY, USA.
Winston LeeDepartment of Ophthalmology, Columbia University, Edward S. Harkness Eye Institute, New York-Presbyterian Hospital, New York, NY, USA.
Merry Z C RuanCollege of Physicians and Surgeons, Columbia University Irving Medical Center, New York, NY, USA.
Megan SoucyDepartment of Ophthalmology, Columbia University, Edward S. Harkness Eye Institute, New York-Presbyterian Hospital, New York, NY, USA.
Sara RagiDepartment of Ophthalmology, Columbia University, Edward S. Harkness Eye Institute, New York-Presbyterian Hospital, New York, NY, USA.
Joy TanakaLaboratory of Personalized Genomic Medicine, Department of Pathology & Cell Biology, Columbia University Medical Center, New York, NY, USA.
Lorraine N ClarkLaboratory of Personalized Genomic Medicine, Department of Pathology & Cell Biology, Columbia University Medical Center, New York, NY, USA.
Ali B NainiLaboratory of Personalized Genomic Medicine, Department of Pathology & Cell Biology, Columbia University Medical Center, New York, NY, USA.
Jun LiaoLaboratory of Personalized Genomic Medicine, Department of Pathology & Cell Biology, Columbia University Medical Center, New York, NY, USA.
Mahesh MansukhaniLaboratory of Personalized Genomic Medicine, Department of Pathology & Cell Biology, Columbia University Medical Center, New York, NY, USA.
Stephen TsangDepartment of Ophthalmology, Columbia University, Edward S. Harkness Eye Institute, New York-Presbyterian Hospital, New York, NY, USA.
Vaidehi JobanputraLaboratory of Personalized Genomic Medicine, Department of Pathology & Cell Biology, Columbia University Medical Center, New York, NY, USA. vj2004@cumc.columbia.edu.
Columbia University Irving Medical Center · USColumbia University · USNewYork–Presbyterian Hospital · US

Funding

Genetic Approaches to Development and DiseaseT32GM141882 · NIGMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI BERCHOWITZ, LUKE E, SHIRASU-HIZA, MICHELE M · 2021 to 2025
$2.1M
6 · The paper itself

Abstract

Inherited retinal degenerations are clinically and genetically heterogeneous diseases characterized by progressive deterioration of vision. This study aimed at assessing the diagnostic yield of exome sequencing (ES) for an unselected cohort of individuals with hereditary retinal disorders. It is a retrospective study of 357 unrelated affected individuals, diagnosed with retinal disorders who underwent clinical ES. Variants from ES were filtered, prioritized, and classified using the ACMG recommendations. Clinical diagnosis of the individuals included rod-cone dystrophy (60%), macular dystrophy (20%), cone-rod dystrophy (9%), cone dystrophy (4%) and other phenotypes (7%). Majority of the cases (74%) were singletons and 6% were trios. A confirmed molecular diagnosis was obtained in 24% of cases. In 6% of cases, two pathogenic variants were identified with phase unknown, bringing the potential molecular diagnostic rate to ~ 30%. Including the variants of uncertain significance (VUS), potentially significant findings were reported in 57% of cases. Among cases with a confirmed molecular diagnosis, variants in EYS, ABCA4, USH2A, KIZ, CERKL, DHDDS, PROM1, NR2E3, CNGB1, ABCC6, PRPH2, RHO, PRPF31, PRPF8, SNRNP200, RP1, CHM, RPGR were identified in more than one affected individual. Our results support the utility of clinical ES in the diagnosis of genetically heterogeneous retinal disorders.

Indexed as

Cone-Rod DystrophiesRetinal DystrophiesATP-Binding Cassette TransportersCell Cycle ProteinsCyclic Nucleotide-Gated Cation ChannelsDNA Mutational AnalysisExomeEye ProteinsHumansMutationPedigreePhenotypeRetrospective StudiesTertiary Care CentersABCA4 protein, humanATP-Binding Cassette TransportersCell Cycle ProteinsCNGB1 protein, humanCyclic Nucleotide-Gated Cation ChannelsEye ProteinsEYS protein, humanKIZ protein, humanRPGR protein, human

Identifiers

PMID35672425
PMCPMC9174483
OpenAlexW4281671752

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.