Evidence map›Paper›PMID 35672333›Full record

ArticleNPJ genomic medicine2022

Scrutinizing pathogenicity of the USH2A c.2276 G > T; p.(Cys759Phe) variant.

Janine Reurink, Erik de Vrieze, Catherina H Z Li, Emma van Berkel, Sanne Broekman, Marco Aben, Theo Peters, Jaap Oostrik, Kornelia Neveling, Hanka Venselaar and 12 more

Open access · goldAbstract read
In one paragraph

Article in NPJ genomic medicine, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.4field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 5 citations in OpenAlex.

  1. HGG advances · 2023
    Article
  2. Article
  3. Whole genome sequencing forHGG advances · 2023
    Article
  4. Global spectrum ofFrontiers in aging neuroscience · 2022
    Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 3 institutions in 2 countries.

Janine ReurinkDepartment of Human Genetics, Radboud University Medical Center, Nijmegen, The Netherlands.ORCID http://orcid.org/0000-0002-5677-9258
Erik de VriezeDonders Institute for Brain Cognition and Behaviour, Radboud University Medical Center, Nijmegen, The Netherlands.
Catherina H Z LiDonders Institute for Brain Cognition and Behaviour, Radboud University Medical Center, Nijmegen, The Netherlands.
Emma van BerkelDepartment of Human Genetics, Radboud University Medical Center, Nijmegen, The Netherlands.
Sanne BroekmanDepartment of Otorhinolaryngology, Radboud University Medical Center, Nijmegen, The Netherlands.
Marco AbenDepartment of Human Genetics, Radboud University Medical Center, Nijmegen, The Netherlands.
Theo PetersDepartment of Otorhinolaryngology, Radboud University Medical Center, Nijmegen, The Netherlands.
Jaap OostrikDepartment of Otorhinolaryngology, Radboud University Medical Center, Nijmegen, The Netherlands.
Kornelia NevelingDepartment of Human Genetics, Radboud University Medical Center, Nijmegen, The Netherlands.
Hanka VenselaarCentre for Molecular and Biomolecular Informatics, Radboud Institute for Molecular Life Sciences, Radboud University Medical Center, Nijmegen, The Netherlands.
Mariana Guimarães RamosDepartment of Human Genetics, Radboud University Medical Center, Nijmegen, The Netherlands.
Christian GilissenDepartment of Human Genetics, Radboud University Medical Center, Nijmegen, The Netherlands.
Galuh D N AstutiDepartment of Human Genetics, Radboud University Medical Center, Nijmegen, The Netherlands.
Jordi Corominas GalbanyDepartment of Human Genetics, Radboud University Medical Center, Nijmegen, The Netherlands.
Janneke J C van Lith-VerhoevenDepartment of Ophthalmology, Elisabeth-TweeSteden Hospital, Tilburg, The Netherlands.
Charlotte W OckeloenDepartment of Human Genetics, Radboud University Medical Center, Nijmegen, The Netherlands.
Lonneke Haer-WigmanDepartment of Human Genetics, Radboud University Medical Center, Nijmegen, The Netherlands.
Carel B HoyngDonders Institute for Brain Cognition and Behaviour, Radboud University Medical Center, Nijmegen, The Netherlands.
Frans P M CremersDepartment of Human Genetics, Radboud University Medical Center, Nijmegen, The Netherlands.
Hannie KremerDepartment of Human Genetics, Radboud University Medical Center, Nijmegen, The Netherlands.
Susanne RoosingDepartment of Human Genetics, Radboud University Medical Center, Nijmegen, The Netherlands. Susanne.Roosing@radboudumc.nl.ORCID http://orcid.org/0000-0001-9038-0067
Erwin van WijkDonders Institute for Brain Cognition and Behaviour, Radboud University Medical Center, Nijmegen, The Netherlands. Erwin.vanWyk@radboudumc.nl.
Radboud University Nijmegen · NLDiponegoro University · IDElisabeth-TweeSteden Ziekenhuis · NL

Funding

Velux Stiftung (Velux Foundation) 1129
6 · The paper itself

Abstract

The USH2A variant c.2276 G > T (p.(Cys759Phe)) has been described by many authors as a frequent cause of autosomal recessive retinitis pigmentosa (arRP). However, this is in contrast with the description of two asymptomatic individuals homozygous for this variant. We therefore assessed pathogenicity of the USH2A c.2276 G > T variant using extensive genetic and functional analyses. Whole genome sequencing and optical genome mapping were performed for three arRP cases homozygous for USH2A c.2276 G > T to exclude alternative genetic causes. A minigene splice assay was designed to investigate the effect of c.2276 G > T on pre-mRNA splicing, in presence or absence of the nearby c.2256 T > C variant. Moreover, an ush2a

Identifiers

PMID35672333
PMCPMC9174243
OpenAlexW4281661770

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.