Evidence map›Paper›PMID 35670741›Full record

ArticlePlant physiology2022

HISTONE DEACETYLASE 15 and MOS4-associated complex subunits 3A/3B coregulate intron retention of ABA-responsive genes.

Yi-Tsung Tu, Chia-Yang Chen, Yi-Sui Huang, Chung-Han Chang, Ming-Ren Yen, Jo-Wei Allison Hsieh, Pao-Yang Chen, Keqiang Wu

Open access · bronzeAbstract read
In one paragraph

Article in Plant physiology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 22 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Yi-Tsung TuInstitute of Plant Biology, National Taiwan University, Taipei 10617, Taiwan.ORCID 0000-0003-3535-2252
Chia-Yang ChenInstitute of Plant Biology, National Taiwan University, Taipei 10617, Taiwan.
Yi-Sui HuangInstitute of Plant Biology, National Taiwan University, Taipei 10617, Taiwan.ORCID 0000-0002-4263-0591
Chung-Han ChangInstitute of Plant Biology, National Taiwan University, Taipei 10617, Taiwan.ORCID 0000-0002-0361-3967
Ming-Ren YenInstitute of Plant and Microbial Biology, Academia Sinica, Taipei 11529, Taiwan.ORCID 0000-0002-9012-3244
Jo-Wei Allison HsiehInstitute of Plant and Microbial Biology, Academia Sinica, Taipei 11529, Taiwan.ORCID 0000-0001-7017-3853
Pao-Yang ChenInstitute of Plant and Microbial Biology, Academia Sinica, Taipei 11529, Taiwan.ORCID 0000-0002-7402-3075
Keqiang WuInstitute of Plant Biology, National Taiwan University, Taipei 10617, Taiwan.ORCID 0000-0002-5791-3594
National Taiwan University · TWInstitute of Plant and Microbial Biology, Academia Sinica · TW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Histone deacetylases (HDAs) play an important role in transcriptional regulation of multiple biological processes. In this study, we investigated the function of HDA15 in abscisic acid (ABA) responses. We used immunopurification coupled with mass spectrometry-based proteomics to identify proteins interacting with HDA15 in Arabidopsis (Arabidopsis thaliana). HDA15 interacted with the core subunits of the MOS4-associated complex (MAC), MAC3A and MAC3B, with interaction between HDA15 and MAC3B enhanced by ABA. hda15 and mac3a/mac3b mutants were ABA-insensitive during seed germination and hyposensitive to salinity. RNA sequencing analysis demonstrated that HDA15 and MAC3A/MAC3B co-regulate ABA-responsive intron retention (IR). Furthermore, HDA15 reduced the histone acetylation level of genomic regions near ABA-responsive IR sites and the association of MAC3B with ABA-responsive pre-mRNA was dependent on HDA15. Our results indicate that HDA15 is involved in ABA responses by interacting with MAC3A/MAC3B to mediate splicing of introns.

Indexed as

ArabidopsisArabidopsis ProteinsBiological PhenomenaAbscisic AcidGene Expression Regulation, PlantGerminationHistone DeacetylasesIntronsSeedsAbscisic AcidArabidopsis ProteinsHDA15 protein, ArabidopsisHistone Deacetylases

Identifiers

PMID35670741
PMCPMC9434327
OpenAlexW4281957280

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.