ArticlePlant physiology2022
The Brassicaceae genome resource (TBGR): A comprehensive genome platform for Brassicaceae plants.
Article in Plant physiology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 20 papers.
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Who cites it
20 citing papers in PubMed, 33 citations in OpenAlex.
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- TVIR 2.0: an enhanced database of the vegetables information resources.Horticulture research · 2025Article
- Largest genome assembly in Brassicaceae: retrotransposon-driven genome expansion and karyotype evolution in Matthiola incana.Plant biotechnology journal · 2025Article
- High-qualityHorticulture research · 2025Article
- Deciphering the near-complete genome and conducting pan-genome analysis ofHorticulture research · 2025Article
- An integrative 3D-genome database for plants.Plant communications · 2025Article
- Systematic identification of R2R3-MYB S6 subfamily genes in Brassicaceae and its role in anthocyanin biosynthesis in Brassica crops.BMC plant biology · 2025Article
- Genome-Wide Identification Analysis of the 4-Coumarate: Coa Ligase (4CL) Gene Family inPlants (Basel, Switzerland) · 2025Article
- Genome-wide identification ofFrontiers in plant science · 2025Article
- plantGIR: a genomic database of plants.Horticulture research · 2024Article
- HortGenome Search Engine, a universal genomic search engine for horticultural crops.Horticulture research · 2024Article
- Large-scale analysis of the ARF and Aux/IAA gene families in 406 horticultural and other plants.Molecular horticulture · 2024Article
- Flowering genes identification, network analysis, and database construction for 837 plants.Horticulture research · 2024Article
- Article
- Molecular evolution analysis of MYB5 in Brassicaceae with specific focus on seed coat color of Brassica napus.BMC plant biology · 2024Article
- The high-quality sequencing of theHorticulture research · 2023Article
- Identification andFrontiers in plant science · 2023Article
- TVIR: a comprehensive vegetable information resource database for comparative and functional genomic studies.Horticulture research · 2022Article
Corrections and comments
- Erratum issued
Authors and funding
13 authors at 4 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The Brassicaceae is an important plant family. We built a user-friendly, web-based, comparative, and functional genomic database, The Brassicaceae Genome Resource (TBGR, http://www.tbgr.org.cn), based on 82 released genomes from 27 Brassicaceae species. The TBGR database contains a large number of important functional genes, including 4,096 glucosinolate genes, 6,625 auxin genes, 13,805 flowering genes, 36,632 resistance genes, 1,939 anthocyanin genes, and 1,231 m6A genes. A total of 1,174,049 specific guide sequences for clustered regularly interspaced short palindromic repeats and 5,856,479 transposable elements were detected in Brassicaceae. TBGR also provides information on synteny, duplication, and orthologs for 27 Brassicaceae species. The TBGR database contains 1,183,851 gene annotations obtained using the TrEMBL, Swiss-Prot, Nr, GO, and Pfam databases. The BLAST, Synteny, Primer Design, Seq_fetch, and JBrowse tools are provided to help users perform comparative genomic analyses. All the genome assemblies, gene models, annotations, and bioinformatics results can be easily downloaded from the TBGR database. We plan to improve and continuously update the database with newly assembled genomes and comparative genomic studies. We expect the TBGR database to become a key resource for the study of the Brassicaceae.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.