Evidence map›Paper›PMID 35670448›Full record

ArticleGenes, chromosomes & cancer2022

Whole genome duplication in oral squamous cell carcinoma in patients younger than 50 years: implications for prognosis and adverse clinicopathological factors.

Laveniya Satgunaseelan, Dario Strbenac, Cali Willet, Tracy Chew, Rosemarie Sadsad, James Wykes, Tsu-Hui Hubert Low, Wendy A Cooper, C Soon Lee, Carsten E Palme and 3 more

Abstract read
In one paragraph

Article in Genes, chromosomes & cancer, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Laveniya SatgunaseelanDepartment of Tissue Pathology and Diagnostic Oncology, NSW Health Pathology, Royal Prince Alfred Hospital, Sydney, NSW, Australia.ORCID 0000-0002-7435-0834
Dario StrbenacSchool of Mathematics and Statistics, The University of Sydney, Sydney, NSW, Australia.
Cali WilletThe Sydney Informatics Hub, Core Research Facilities, The University of Sydney, Sydney, NSW, Australia.
Tracy ChewThe Sydney Informatics Hub, Core Research Facilities, The University of Sydney, Sydney, NSW, Australia.
Rosemarie SadsadThe Sydney Informatics Hub, Core Research Facilities, The University of Sydney, Sydney, NSW, Australia.ORCID 0000-0003-2488-953X
James WykesSydney Medical School, Faculty of Medicine and Health Sciences, The University of Sydney, Sydney, NSW, Australia.
Tsu-Hui Hubert LowSydney Medical School, Faculty of Medicine and Health Sciences, The University of Sydney, Sydney, NSW, Australia.
Wendy A CooperDepartment of Tissue Pathology and Diagnostic Oncology, NSW Health Pathology, Royal Prince Alfred Hospital, Sydney, NSW, Australia.
C Soon LeeDepartment of Tissue Pathology and Diagnostic Oncology, NSW Health Pathology, Royal Prince Alfred Hospital, Sydney, NSW, Australia.
Carsten E PalmeSydney Medical School, Faculty of Medicine and Health Sciences, The University of Sydney, Sydney, NSW, Australia.
Jean Y H YangSchool of Mathematics and Statistics, The University of Sydney, Sydney, NSW, Australia.
Jonathan R ClarkSydney Medical School, Faculty of Medicine and Health Sciences, The University of Sydney, Sydney, NSW, Australia.
Ruta GuptaDepartment of Tissue Pathology and Diagnostic Oncology, NSW Health Pathology, Royal Prince Alfred Hospital, Sydney, NSW, Australia.ORCID 0000-0003-2940-313X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

introductionOral squamous cell carcinoma (OSCC) in the young (<50 years), without known carcinogenic risk factors, is on the rise globally. Whole genome duplication (WGD) has been shown to occur at higher rates in cancers without an identifiable carcinogenic agent. We aimed to evaluate the prevalence of WGD in a cohort of OSCC patients under the age of 50 years.

methodsWhole genome sequencing (WGS) was performed on 28 OSCC patients from the Sydney Head and Neck Cancer Institute (SHNCI) biobank. An additional nine cases were obtained from The Cancer Genome Atlas (TCGA).

resultsWGD was seen in 27 of 37 (73%) cases. Non-synonymous, somatic TP53 mutations occurred in 25 of 27 (93%) cases of WGD and were predicted to precede WGD in 21 (77%). WGD was significantly associated with larger tumor size (p = 0.01) and was frequent in patients with recurrences (87%, p = 0.36). Overall survival was significantly worse in those with WGD (p = 0.05).

conclusionsOur data, based on one of the largest WGS datasets of young patients with OSCC, demonstrates a high frequency of WGD and its association with adverse pathologic characteristics and clinical outcomes. TP53 mutations also preceded WGD, as has been described in other tumors without a clear mutagenic driver.

Indexed as

Carcinoma, Squamous CellHead and Neck NeoplasmsMouth NeoplasmsGene DuplicationHumansMiddle AgedSquamous Cell Carcinoma of Head and Neck

Identifiers

PMID35670448
PMCPMC9542139

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.