ArticleJournal of cheminformatics2022
RanDepict: Random chemical structure depiction generator.
Article in Journal of cheminformatics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.
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Who cites it
4 citing papers in PubMed.
- General-Purpose Models for the Chemical Sciences: LLMs and Beyond.Chemical reviews · 2026Review
- Advancements in hand-drawn chemical structure recognition through an enhanced DECIMER architecture.Journal of cheminformatics · 2024Article
- Cheminformatics Microservice: unifying access to open cheminformatics toolkits.Journal of cheminformatics · 2023Article
- DECIMER.ai: an open platform for automated optical chemical structure identification, segmentation and recognition in scientific publications.Nature communications · 2023Article
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Authors and funding
4 authors.
Funding
Abstract
The development of deep learning-based optical chemical structure recognition (OCSR) systems has led to a need for datasets of chemical structure depictions. The diversity of the features in the training data is an important factor for the generation of deep learning systems that generalise well and are not overfit to a specific type of input. In the case of chemical structure depictions, these features are defined by the depiction parameters such as bond length, line thickness, label font style and many others. Here we present RanDepict, a toolkit for the creation of diverse sets of chemical structure depictions. The diversity of the image features is generated by making use of all available depiction parameters in the depiction functionalities of the CDK, RDKit, and Indigo. Furthermore, there is the option to enhance and augment the image with features such as curved arrows, chemical labels around the structure, or other kinds of distortions. Using depiction feature fingerprints, RanDepict ensures diversely picked image features. Here, the depiction and augmentation features are summarised in binary vectors and the MaxMin algorithm is used to pick diverse samples out of all valid options. By making all resources described herein publicly available, we hope to contribute to the development of deep learning-based OCSR systems.
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Registered trials
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