Evidence map›Paper›PMID 35668357›Full record

ArticleBMC bioinformatics2022

GridScore: a tool for accurate, cross-platform phenotypic data collection and visualization.

Sebastian Raubach, Miriam Schreiber, Paul D Shaw

Abstract read
In one paragraph

Article in BMC bioinformatics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Review
  7. Sainfoin (Frontiers in plant science · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Sebastian RaubachDepartment of Information and Computational Sciences, The James Hutton Institute, Invergowrie, Dundee, Scotland. sebastian.raubach@hutton.ac.uk.ORCID http://orcid.org/0000-0001-5659-247X
Miriam SchreiberDepartment of Life Science, University of Dundee, Dundee, Scotland.
Paul D ShawDepartment of Information and Computational Sciences, The James Hutton Institute, Invergowrie, Dundee, Scotland.

Funding

Biotechnology and Biological Sciences Research Council BB/S004610/1
6 · The paper itself

Abstract

backgroundPlant breeding and crop research rely on experimental phenotyping trials. These trials generate data for large numbers of traits and plant varieties that needs to be captured efficiently and accurately to support further research and downstream analysis. Traditionally scored by hand, phenotypic data is nowadays collected using spreadsheets or specialized apps. While many solutions exist, which increase efficiency and reduce errors, none offer the same familiarity as printed field plans which have been used for decades and offer an intuitive overview over the trial setup, previously recorded data and plots still requiring scoring.

resultsWe introduce GridScore which utilizes cutting-edge web technologies to reproduce the familiarity of printed field plans while enhancing the phenotypic data collection process by adding advanced features like georeferencing, image tagging and speech recognition. GridScore is a cross-platform open-source plant phenotyping app that combines barcode-based systems with a guided data collection approach while offering a top-down view onto the data collected in a field layout. GridScore is compared to existing tools across a wide spectrum of criteria including support for barcodes, multiple platforms, and visualizations.

conclusionCompared to its competition, GridScore shows strong performance across the board offering a complete manual phenotyping experience.

Indexed as

Crops, AgriculturalPlant BreedingData CollectionPhenotypeBioinformaticsData-collectionData-transferData-visualizationPhenotypingPlant-breedingPlant-genetics

Identifiers

PMID35668357
PMCPMC9169276

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.