Evidence map›Paper›PMID 35667129›Full record

ArticleBiophysical chemistry2022

The B-box1 domain of PML mediates SUMO E2-E3 complex formation through an atypical interaction with UBC9.

Thomas Bregnard, Affrin Ahmed, Irina V Semenova, Sandra K Weller, Irina Bezsonova

Open access · greenAbstract read
In one paragraph

Article in Biophysical chemistry, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.3field-weighted citation impact, top 49% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Article
  3. PML Body Biogenesis: A Delicate Balance of Interactions.International journal of molecular sciences · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Thomas BregnardDepartment of Molecular Biology and Biophysics, UCONN Health, Farmington, CT 06032, USA.
Affrin AhmedDepartment of Molecular Biology and Biophysics, UCONN Health, Farmington, CT 06032, USA.
Irina V SemenovaDepartment of Molecular Biology and Biophysics, UCONN Health, Farmington, CT 06032, USA.
Sandra K WellerDepartment of Molecular Biology and Biophysics, UCONN Health, Farmington, CT 06032, USA.
Irina BezsonovaDepartment of Molecular Biology and Biophysics, UCONN Health, Farmington, CT 06032, USA. Electronic address: bezsonova@uchc.edu.
UConn Health · US

Funding

UBIQUITIN-PROTEASOME PATHWAY IN CANCERR35GM128864 · NIGMS · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI BEZSONOVA, IRINA · 2018 to 2022
$1.6M
Oxidation is a trigger for PML multimerization and Nuclear Body formation in HSV infected cellsR21AI135451 · NIAID · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI BEZSONOVA, IRINA, WELLER, SANDRA K · 2018 to 2019
$433k
NIAID NIH HHS R21 AI135451NIGMS NIH HHS R35 GM128864
6 · The paper itself

Abstract

The small, ubiquitin-like modifier SUMO is covalently attached to substrates by the enzyme UBC9. SUMO conjugation of substrates often requires an E3 ligase, which ensures substrate specificity by simultaneously binding UBC9 and the substrate. E3 SUMO ligases commonly use a RING domain to engage UBC9. The Promyelocytic Leukemia protein (PML) has been implicated as a probable SUMO ligase. Although PML does contain a RING domain, which is expected to recruit UBC9, we demonstrate that PML RING does not bind UBC9 in vitro. Instead, we show that isolated PML B-box1 possesses UBC9-binding activity and map the B-box1 binding site on UBC9. This site also binds the upstream E1 enzyme that transfers SUMO to UBC9. The overlap of these two binding sites suggests that UBC9 cannot interact with its E1 and E3 partners simultaneously. Furthermore, we present a model of the PML dimer that supports the accessibility of B-box1 for UBC9 binding in the context of the full-length PML.

Indexed as

UbiquitinUbiquitin-Conjugating EnzymesBinding SitesSubstrate SpecificityTranscription FactorsTranscription FactorsUbiquitinUbiquitin-Conjugating EnzymesE3 ligaseNuclear magnetic resonance (NMR)Promyelocytic leukemia protein (PML)Protein bindingSmall ubiquitin-like modifier (SUMO)UBC9

Identifiers

PMID35667129
PMCPMC9491232
OpenAlexW4280494347

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.