Evidence map›Paper›PMID 35666530›Full record

ArticleInternational journal of cancer2022

Redesign of a rapid, low-cost HPV typing assay to support risk-based cervical screening and management.

Kanan T Desai, Clement A Adepiti, Mark Schiffman, Didem Egemen, Julia C Gage, Nicolas Wentzensen, Silvia de Sanjose, Robert D Burk, Kayode O Ajenifuja

Abstract read
In one paragraph

Article in International journal of cancer, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

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  14. The Future of Cervical Cancer Screening.International journal of women's health · 2024
    Review
  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Kanan T DesaiClinical Epidemiology Unit, Clinical Genetic Branch, Division of Cancer Epidemiology and Genetics, National Cancer Institute, Rockville, Maryland, USA.ORCID 0000-0002-8992-5944
Clement A AdepitiDepartment of Obstetrics, Gynecology, and Perinatology, The Obafemi Awolowo University, Ile-Ife, Osun State, Nigeria.
Mark SchiffmanClinical Epidemiology Unit, Clinical Genetic Branch, Division of Cancer Epidemiology and Genetics, National Cancer Institute, Rockville, Maryland, USA.
Didem EgemenClinical Epidemiology Unit, Clinical Genetic Branch, Division of Cancer Epidemiology and Genetics, National Cancer Institute, Rockville, Maryland, USA.
Julia C GageClinical Epidemiology Unit, Clinical Genetic Branch, Division of Cancer Epidemiology and Genetics, National Cancer Institute, Rockville, Maryland, USA.
Nicolas WentzensenClinical Epidemiology Unit, Clinical Genetic Branch, Division of Cancer Epidemiology and Genetics, National Cancer Institute, Rockville, Maryland, USA.ORCID 0000-0003-1251-0836
Silvia de SanjoseClinical Epidemiology Unit, Clinical Genetic Branch, Division of Cancer Epidemiology and Genetics, National Cancer Institute, Rockville, Maryland, USA.
Robert D BurkAlbert Einstein Cancer Center, Albert Einstein College of Medicine, New York, New York, USA.
Kayode O AjenifujaDepartment of Obstetrics, Gynecology, and Perinatology, The Obafemi Awolowo University, Ile-Ife, Osun State, Nigeria.

Funding

Cervical Cancer MoonshotZIACP010230 · NCI · DIVISION OF CANCER EPIDEMIOLOGY AND GENETICS · PI SCHIFFMAN, MARK · 2018 to 2025
$33.8M
Investigations Into The Molecular Pathogenesis Of Cervical Glandular NeoplasiasU01CA238592 · NCI · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI BURK, ROBERT D, STRICKLER, HOWARD D · 2020 to 2024
$2.8M
Intramural NIH HHS Z99 CA999999Intramural NIH HHS ZIA CP010230NCI NIH HHS U01 CA238592
6 · The paper itself

Abstract

Accelerated cervical cancer control will require widespread human papillomavirus (HPV) vaccination and screening. For screening, sensitive HPV testing with an option of self-collection is increasingly desirable. HPV typing predicts risk of precancer/cancer, which could be useful in management, but most current typing assays are expensive and/or complicated. An existing 15-type isothermal amplification assay (AmpFire, Atila Biosystems, USA) was redesigned as a 13-type assay (ScreenFire) for public health use. The redesigned assay groups HPV types into four channels with differential cervical cancer risk: (a) HPV16, (b) HPV18/45, (c) HPV31/33/35/52/58 and (d) HPV39/51/56/59/68. Since the assay will be most useful in resource-limited settings, we chose a stratified random sample of 453 provider-collected samples from a population-based screening study in rural Nigeria that had been initially tested with MY09-MY11-based PCR with oligonucleotide hybridization genotyping. Frozen residual specimens were masked and retested at Atila Biosystems. Agreement on positivity between ScreenFire and prior PCR testing was very high for each of the channels. When we simulated intended use, that is, a hierarchical result in order of clinical importance of the type groups (HPV16 > 18/45 > 31/33/35/52/58 > 39/51/56/59/68), the weighted kappa for ScreenFire vs PCR was 0.90 (95% CI: 0.86-0.93). The ScreenFire assay is mobile, relatively simple, rapid (results within 20-60 minutes) and agrees well with reference testing particularly for the HPV types of greatest carcinogenic risk. If confirmed, ScreenFire or similar isothermal amplification assays could be useful as part of risk-based screening and management.

Indexed as

Papillomavirus InfectionsUterine Cervical NeoplasmsCervix UteriDNA, ViralEarly Detection of CancerFemaleGenotypeHuman papillomavirus 16HumansPapillomaviridaeDNA, Viralcervical screeningHPV genotypingisothermal amplificationrisk-based management

Identifiers

PMID35666530
PMCPMC9378567

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.