Evidence map›Paper›PMID 35665777›Full record

ArticleHeredity2022

Population genetics reveals divergent lineages and ongoing hybridization in a declining migratory fish species complex.

Quentin Rougemont, Charles Perrier, Anne-Laure Besnard, Isabelle Lebel, Yann Abdallah, Eric Feunteun, Elodie Réveillac, Emilien Lasne, Anthony Acou, David José Nachón and 4 more

Abstract read
In one paragraph

Article in Heredity, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Quentin RougemontDECOD (Ecosystem Dynamics and Sustainability), INRAE, Institut Agro, IFREMER, Rennes, France. quentinrougemont@orange.fr.ORCID http://orcid.org/0000-0003-2987-3801
Charles PerrierUMR CBGP, INRAE, CIRAD, IRD, Institut Agro, Univ Montpellier, Montpellier, France.ORCID http://orcid.org/0000-0001-5820-9374
Anne-Laure BesnardDECOD (Ecosystem Dynamics and Sustainability), INRAE, Institut Agro, IFREMER, Rennes, France.
Isabelle LebelMigrateurs Rhône Méditerranée, Arles, France.
Yann AbdallahMigrateurs Rhône Méditerranée, Arles, France.
Eric FeunteunUMS OFB-CNRS-MNHN PatriNat, Station marine du Museum National d'Histoire Naturelle, Dinard, France.
Elodie RéveillacUMS OFB-CNRS-MNHN PatriNat, Station marine du Museum National d'Histoire Naturelle, Dinard, France.
Emilien LasneDECOD (Ecosystem Dynamics and Sustainability), INRAE, Institut Agro, IFREMER, Rennes, France.ORCID http://orcid.org/0000-0001-5289-4542
Anthony AcouLIENSs, Univ La Rochelle CNRS, La Rochelle, France.
David José NachónDepartamento de Zooloxía, Xenética e Antropoloxía Física, Facultade de Bioloxía, Universidade de Santiago de Compostela, Santiago de Compostela, Spain.ORCID http://orcid.org/0000-0002-1090-9993
Fernando CoboDepartamento de Zooloxía, Xenética e Antropoloxía Física, Facultade de Bioloxía, Universidade de Santiago de Compostela, Santiago de Compostela, Spain.
Guillaume EvannoDECOD (Ecosystem Dynamics and Sustainability), INRAE, Institut Agro, IFREMER, Rennes, France.
Jean-Luc BaglinièreDECOD (Ecosystem Dynamics and Sustainability), INRAE, Institut Agro, IFREMER, Rennes, France.
Sophie LauneyDECOD (Ecosystem Dynamics and Sustainability), INRAE, Institut Agro, IFREMER, Rennes, France.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Deciphering the effects of historical and recent demographic processes responsible for the spatial patterns of genetic diversity and structure is a key objective in evolutionary and conservation biology. Using population genetic analyses, we investigated the demographic history, the contemporary genetic diversity and structure, and the occurrence of hybridization and introgression of two species of anadromous fish with contrasting life history strategies and which have undergone recent demographic declines, the allis shad (Alosa alosa) and the twaite shad (Alosa fallax). We genotyped 706 individuals from 20 rivers and 5 sites at sea in Southern Europe at thirteen microsatellite markers. Genetic structure between populations was lower for the nearly semelparous species A. alosa, which disperses greater distances compared to the iteroparous species, A. fallax. Individuals caught at sea were assigned at the river level for A. fallax and at the region level for A. alosa. Using an approximate Bayesian computation framework, we inferred that the most likely long term historical divergence scenario between both species and lineages involved historical separation followed by secondary contact accompanied by strong population size decline. Accordingly, we found evidence for contemporary hybridization and bidirectional introgression due to gene flow between both species and lineages. Moreover, our results support the existence of at least one distinct species in the Mediterrannean sea: A. agone in Golfe du Lion area, and another divergent lineage in Corsica. Overall, our results shed light on the interplay between historical and recent demographic processes and life history strategies in shaping population genetic diversity and structure of closely related species. The recent demographic decline of these species' populations and their hybridization should be carefully considered while implementing conservation programs.

Indexed as

FishesGenetics, PopulationAnimalsBayes TheoremGene FlowGenetic VariationHybridization, GeneticInvertebrates

Identifiers

PMID35665777
PMCPMC9338086

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.