Evidence map›Paper›PMID 35665441›Full record

ArticleMolecular biology reports2022

Assessment of genetic diversity among 131 safflower (Carthamus tinctorius L.) accessions using peroxidase gene polymorphism (POGP) markers.

Mehtap Yildiz, Muhammad Tanveer Altaf, Faheem Shehzad Baloch, Metin Koçak, Gökhan Sadık, Cansu Kuzğun, Muhammad Azhar Nadeem, Fawad Ali, Mehmet Bedir, Murat Tunçtürk

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Article in Molecular biology reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

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5 citing papers in PubMed.

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10 authors.

Mehtap YildizDepartment of Agricultural Biotechnology, Faculty of Agriculture, Van Yuzuncu Yil University, 65080, Van, Turkey. mehtapyildiz@gmail.com.
Muhammad Tanveer AltafFaculty of Agricultural Sciences and Technologies, Sivas University of Science and Technology, 58140, Sivas, Turkey.
Faheem Shehzad BalochFaculty of Agricultural Sciences and Technologies, Sivas University of Science and Technology, 58140, Sivas, Turkey. balochfaheem13@gmail.com.ORCID http://orcid.org/0000-0002-7470-0080
Metin KoçakDepartment of Agricultural Biotechnology, Faculty of Agriculture, Van Yuzuncu Yil University, 65080, Van, Turkey.
Gökhan SadıkDepartment of Agricultural Biotechnology, Faculty of Agriculture, Van Yuzuncu Yil University, 65080, Van, Turkey.
Cansu KuzğunDepartment of Agricultural Biotechnology, Faculty of Agriculture, Van Yuzuncu Yil University, 65080, Van, Turkey.
Muhammad Azhar NadeemFaculty of Agricultural Sciences and Technologies, Sivas University of Science and Technology, 58140, Sivas, Turkey.
Fawad AliDepartment of Plant Sciences, Quaid-I-Azam University, Islamabad, Pakistan.
Mehmet BedirFaculty of Agricultural Sciences and Technologies, Sivas University of Science and Technology, 58140, Sivas, Turkey.
Murat TunçtürkDepartment of Field Crops, Faculty of Agriculture, Van Yuzuncu Yil University, 65080, Van, Turkey.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundSafflower (Carthamus tinctorius L.) is an old oilseed crop with a 1.4 GB genome size and its flowers are used for food coloring, dyes and pharmaceutical industries. It was domesticated from its putative wild ancestor Carthamus palestinus about forty-five hundred years ago in the fertile crescent region.The current study was aimed to determine the genetic diversity, population structure and to check the applicability of iPBS-retrotransposons markers. METHODS AND

resultsEleven POGP primers yielded 70 bands of which 61 were highly polymorphic with 87.14% polymorphism. A great level of genetic variation was examined with higher values of overall gene diversity (0.27), genetic distance (0.53), number of effective alleles (1.46), Shannon's information index (0.41) and polymorphism information contents (0.71). Analysis of molecular variance revealed high genetic variation with 79% within the population. The STRUCTURE, PCoA and Neighbor-joining analysis separated the safflower germplasm into 2 major populations and 1 un-classified population. The accessions which were from Asian countries i.e., China, Afghanistan, Turkey, Iran and Pakistan were genetically similar and clustered together in both populations A and B. The maximum genetic distance was measured 0.88 between Pakistan 26 x Pakistan 24.

conclusionFindings of this research such as maximum diversity indices, higher PIC values showed the effectiveness and utility of POGP markers for the evaluation of genetic relationships among safflower accessions. The results of this study also showed that POGP markers are less effective compared to ISSRs, iPBS-retrotransposons and DArTSeq markers. AMOVA showed high genetic variation (79%) within a population and maximum genetic distance was found between the accessions Pakistan 26- Pakistan 24 and may be suggested as candidate parents for future breeding activities of safflower. The accessions from the fertile crescent region were clustered together and proved the origin of safflower domestication. This study highlights genetic variation among safflower germplasm and could be helpfull for parental selection and planning for future breeding programs.

Indexed as

Carthamus tinctoriusColoring AgentsDNA, PlantGenetic VariationPakistanPeroxidasePlant BreedingPolymorphism, GeneticRetroelementsColoring AgentsDNA, PlantPeroxidaseRetroelementsCarthamus tinctorius LGenetic diversityPeroxidasePOGP

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