Evidence map›Paper›PMID 35664657›Full record

ArticleData in brief2022

Metabolomics dataset of mouse optogenetic axon regeneration after optic nerve crush.

Alexa M Jauregui, Yuan Liu, Sanjoy K Bhattacharya, Richard K Lee

Open access · goldAbstract read
In one paragraph

Article in Data in brief, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 52% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Alexa M JaureguiBascom Palmer Eye Institute, University of Miami Miller School of Medicine, Miami, FL, 33136, USA.
Yuan LiuBascom Palmer Eye Institute, University of Miami Miller School of Medicine, Miami, FL, 33136, USA.
Sanjoy K BhattacharyaBascom Palmer Eye Institute, University of Miami Miller School of Medicine, Miami, FL, 33136, USA.
Richard K LeeBascom Palmer Eye Institute, University of Miami Miller School of Medicine, Miami, FL, 33136, USA.
University of Miami · US

Funding

National Metabolomics Data Repository - nextgen Metabolomics WorkbenchU2CDK119886 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SUBRAMANIAM, SHANKAR · 2018 to 2021
$12.7M
Shared Equipment ModuleP30EY014801 · NEI · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI Victor L Perez · 2004 to 2026
$12.2M
Novel Targets to Promote RGC Axon Regeneration: Insights from Unique RGC CohortsU01EY027257 · NEI · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI BHATTACHARYA, SANJOY K, LEMMON, VANCE P · 2016 to 2018
$2.0M
NEI NIH HHS P30 EY014801NEI NIH HHS U01 EY027257NIDDK NIH HHS U2C DK119886
6 · The paper itself

Abstract

This metabolite dataset was collected from transgenic murine retinal ganglion cells (RGC) expressing bacterial channelrhodopsin labeled with fluorescent protein. Mice were subjected to optic nerve crush (ONC) with subsequent RGC stimulation of channelrhodopsin with blue light (promoting regeneration) or non-stimulation (control). ONC induces retinal ganglion cell degeneration over time with progressive loss of axons. In transgenic bacterial channelrhodopsin expressing RGC cells, light stimulation promotes regeneration of ONC axons. Genetically matched wild-type uninjured optic nerves were analyzed as controls for comparison. Metabolites were carefully extracted from finely minced optic nerve tissue using a solvent system (initial separation using 1:1 methanol and H

Indexed as

Axon regenerationHigh-performance liquid chromatographyMetabolomicsOptic nerve crushOptogenetics

Identifiers

PMID35664657
PMCPMC9156864
OpenAlexW4281260155

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.