Evidence map›Paper›PMID 35663013›Full record

ArticleiScience2022

Extracellular vesicles carry distinct proteo-transcriptomic signatures that are different from their cancer cell of origin.

Tzu-Yi Chen, Edgar Gonzalez-Kozlova, Taliah Soleymani, Sabrina La Salvia, Natasha Kyprianou, Susmita Sahoo, Ashutosh K Tewari, Carlos Cordon-Cardo, Gustavo Stolovitzky, Navneet Dogra

Abstract read
In one paragraph

Article in iScience, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Review
  12. Advancements in CRISPR-basedFrontiers in genome editing · 2026
    Review
  13. Article
  14. Tumor-derived extracellular vesicles: Bridging communication and next-generation theranostics.Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie · 2025
    Review
  15. Review
  16. Article
  17. Article
  18. Review
  19. Gene Copy Number Dictates Extracellular Vesicle Cargo.International journal of molecular sciences · 2025
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Tzu-Yi ChenDepartment of Pathology, Icahn School of Medicine at Mount Sinai, New York 10029, USA.
Edgar Gonzalez-KozlovaDepartment of Genetics and Genomics Sciences, Icahn School of Medicine at Mount Sinai, New York 10029, USA.
Taliah SoleymaniDepartment of Pathology, Icahn School of Medicine at Mount Sinai, New York 10029, USA.
Sabrina La SalviaDepartment of Cardiology, Icahn School of Medicine at Mount Sinai, New York 10029, USA.
Natasha KyprianouDepartment of Oncological Sciences, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.
Susmita SahooDepartment of Cardiology, Icahn School of Medicine at Mount Sinai, New York 10029, USA.
Ashutosh K TewariDepartment of Oncological Sciences, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.
Carlos Cordon-CardoDepartment of Pathology, Icahn School of Medicine at Mount Sinai, New York 10029, USA.
Gustavo StolovitzkyDepartment of Genetics and Genomics Sciences, Icahn School of Medicine at Mount Sinai, New York 10029, USA.
Navneet DograDepartment of Pathology, Icahn School of Medicine at Mount Sinai, New York 10029, USA.

Funding

Scientific ReagentsP01CA087497 · NCI · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI PRIVES, CAROL · 2000 to 2021
$35.4M
Extracellular Vesicle-Encapsulated AAVs for Therapeutic Gene Delivery to the HeartR01HL148786 · NHLBI · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI Kiyotake Ishikawa, Susmita Sahoo · 2019 to 2026
$4.1M
Treatment-Induced Phenotypic Reprogramming in Prostate CancerR01CA232574 · NCI · UNIVERSITY OF KENTUCKY · PI KYPRIANOU, NATASHA · 2019 to 2023
$2.2M
COVID and Translational Science supercomputer (CATS)S10OD030463 · OD · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI KOVATCH, PATRICIA · 2021 to 2021
$2.0M
Big Omics Data Engine 2 SupercomputerS10OD026880 · OD · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI KOVATCH, PATRICIA · 2019 to 2019
$2.0M
NCI NIH HHS P01 CA087497NCI NIH HHS R01 CA232574NHLBI NIH HHS R01 HL148786NIH HHS S10 OD026880NIH HHS S10 OD030463
6 · The paper itself

Abstract

Circulating extracellular vesicles (EVs) contain molecular footprints-lipids, proteins, RNA, and DNA-from their cell of origin. Consequently, EV-associated RNA and proteins have gained widespread interest as liquid-biopsy biomarkers. Yet, an integrative proteo-transcriptomic landscape of EVs and comparison with their cell of origin remains obscure. Here, we report that EVs enrich distinct proteo-transcriptome that does not linearly correlate with their cell of origin. We show that EVs enrich endosomal and extracellular proteins, small RNA (∼13-200 nucleotides) associated with cell differentiation, development, and Wnt signaling. EVs cargo specific RNAs (RNY3, vtRNA, and MIRLET-7) and their complementary proteins (YBX1, IGF2BP2, and SRSF1/2). To ensure an unbiased and independent analyses, we studied 12 cancer cell lines, matching EVs (inhouse and exRNA database), and serum EVs of patients with prostate cancer. Together, we show that EV-RNA-protein complexes may constitute a functional interaction network to protect and regulate molecular access until a function is achieved.

Indexed as

Cancer systems biologyMicroenvironmentTranscriptomics

Identifiers

PMID35663013
PMCPMC9157216

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.