ArticleProceedings. IEEE International Conference on Cloud Computing2021
HySec-Flow: Privacy-Preserving Genomic Computing with SGX-based Big-Data Analytics Framework.
Article in Proceedings. IEEE International Conference on Cloud Computing, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
6 citing papers in PubMed, 1 citations in OpenAlex.
- Recent advances in defending the privacy attacks of large language models for healthcare applications: a concise review.Frontiers in artificial intelligence · 2026Review
- Learning-augmented sketching offers improved performance for privacy preserving and secure GWAS.iScience · 2025Article
- Learning-Augmented Sketching Offers Improved Performance for Privacy Preserving and Secure GWAS.bioRxiv : the preprint server for biology · 2024Article
- Privacy-Enhancing Technologies in Biomedical Data Science.Annual review of biomedical data science · 2024Review
- Genomic privacy preservation in genome-wide association studies: taxonomy, limitations, challenges, and vision.Briefings in bioinformatics · 2024Review
- The evolving privacy and security concerns for genomic data analysis and sharing as observed from the iDASH competition.Journal of the American Medical Informatics Association : JAMIA · 2022Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
7 authors at 2 institutions in 1 country.
Funding
Abstract
Trusted execution environments (TEE) such as Intel's Software Guard Extension (SGX) have been widely studied to boost security and privacy protection for the computation of sensitive data such as human genomics. However, a performance hurdle is often generated by SGX, especially from the small enclave memory. In this paper, we propose a new Hybrid Secured Flow framework (called "HySec-Flow") for large-scale genomic data analysis using SGX platforms. Here, the data-intensive computing tasks can be partitioned into independent subtasks to be deployed into distinct secured and non-secured containers, therefore allowing for parallel execution while alleviating the limited size of Page Cache (EPC) memory in each enclave. We illustrate our contributions using a workflow supporting indexing, alignment, dispatching, and merging the execution of SGX- enabled containers. We provide details regarding the architecture of the trusted and untrusted components and the underlying Scorn and Graphene support as generic shielding execution frameworks to port legacy code. We thoroughly evaluate the performance of our privacy-preserving reads mapping algorithm using real human genome sequencing data. The results demonstrate that the performance is enhanced by partitioning the time-consuming genomic computation into subtasks compared to the conventional execution of the data-intensive reads mapping algorithm in an enclave. The proposed HySec-Flow framework is made available as an open-source and adapted to the data-parallel computation of other large-scale genomic tasks requiring security and scalable computational resources.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.