Evidence map›Paper›PMID 35661736›Full record

ArticleNature communications2022

Unraveling function and diversity of bacterial lectins in the human microbiome.

Louis J Cohen, Sun M Han, Pearson Lau, Daniela Guisado, Yupu Liang, Toshiki G Nakashige, Thamina Ali, David Chiang, Adeeb Rahman, Sean F Brady

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.9field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Louis J Cohen *Department of Medicine, Icahn Genomics Institute, Icahn School of Medicine at Mount Sinai, New York, NY, USA. louis.cohen@mssm.edu.ORCID 0000-0002-9925-5913
Sun M HanDepartment of Medicine, Icahn Genomics Institute, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Pearson LauDepartment of Medicine, Icahn Genomics Institute, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Daniela GuisadoDepartment of Medicine, Icahn Genomics Institute, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Yupu LiangRockefeller University, New York, NY, USA.
Toshiki G NakashigeLaboratory of Genetically Encoded Small Molecules, Rockefeller University, New York, NY, USA.
Thamina AliLaboratory of Genetically Encoded Small Molecules, Rockefeller University, New York, NY, USA.
David ChiangDivision of Internal Medicine-Pediatrics, University of Massachusetts Medical School, Worcester, MA, USA.
Adeeb RahmanHuman Immune Monitoring Core, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Sean F Brady *Laboratory of Genetically Encoded Small Molecules, Rockefeller University, New York, NY, USA. sbrady@rockefeller.edu.ORCID 0000-0001-5967-8586
Icahn School of Medicine at Mount Sinai · USRockefeller University · USUniversity of Massachusetts Chan Medical School · US

Funding

Overall Priority Score P41GM103694 · NIGMS · EMORY UNIVERSITY · PI CUMMINGS, RICHARD D · 2013 to 2018
$6.9M
Discovery of Antibiotics from Soil Microbiomes Using MetagenomicsR35GM122559 · NIGMS · ROCKEFELLER UNIVERSITY · PI SEAN F BRADY · 2017 to 2026
$4.7M
Protein-Glycan Interaction Resource of the CFGR24GM098791 · NIGMS · EMORY UNIVERSITY · PI CUMMINGS, RICHARD D, PAULSON, JAMES C · 2011 to 2013
$2.6M
Discovery of GPCR-active natural products and their biosynthetic genes from the human associated bacteriaR01AT009562 · NCCIH · ROCKEFELLER UNIVERSITY · PI BRADY, SEAN F · 2017 to 2021
$2.2M
Defining Host-Microbial Interactions Using Functional MetagenomicsK08DK109287 · NIDDK · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI COHEN, LOUIS JARED · 2016 to 2021
$834k
NCCIH NIH HHS R01 AT009562NIDDK NIH HHS K08 DK109287NIGMS NIH HHS P41 GM103694NIGMS NIH HHS R24 GM098791NIGMS NIH HHS R35 GM122559
6 · The paper itself

Abstract

The mechanisms by which commensal organisms affect human physiology remain poorly understood. Lectins are non-enzymatic carbohydrate binding proteins that all organisms employ as part of establishing a niche, evading host-defenses and protecting against pathogens. Although lectins have been extensively studied in plants, bacterial pathogens and human immune cells for their role in disease pathophysiology and as therapeutics, the role of bacterial lectins in the human microbiome is largely unexplored. Here we report on the characterization of a lectin produced by a common human associated bacterium that interacts with myeloid cells in the blood and intestine. In mouse and cell-based models, we demonstrate that this lectin induces distinct immunologic responses in peripheral and intestinal leukocytes and that these responses are specific to monocytes, macrophages and dendritic cells. Our analysis of human microbiota sequencing data reveal thousands of unique sequences that are predicted to encode lectins, many of which are highly prevalent in the human microbiome yet completely uncharacterized. Based on the varied domain architectures of these lectins we predict they will have diverse effects on the human host. The systematic investigation of lectins in the human microbiome should improve our understanding of human health and provide new therapeutic opportunities.

Indexed as

LectinsMicrobiotaAnimalsBacteriaHumansMicePlantsLectins

Identifiers

PMID35661736
PMCPMC9166713
OpenAlexW4281614793

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.