Evidence map›Paper›PMID 35661418›Full record

ArticleMolecular ecology resources2022

A guide to avian museomics: Insights gained from resequencing hundreds of avian study skins.

Martin Irestedt, Filip Thörn, Ingo A Müller, Knud A Jønsson, Per G P Ericson, Mozes P K Blom

Abstract read
In one paragraph

Article in Molecular ecology resources, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Martin IrestedtDepartment of Bioinformatics and Genetics, Swedish Museum of Natural History, Stockholm, Sweden.ORCID https://orcid.org/0000-0003-1680-6861
Filip ThörnDepartment of Bioinformatics and Genetics, Swedish Museum of Natural History, Stockholm, Sweden.ORCID https://orcid.org/0000-0002-8173-7877
Ingo A MüllerDepartment of Bioinformatics and Genetics, Swedish Museum of Natural History, Stockholm, Sweden.ORCID https://orcid.org/0000-0002-8812-9313
Knud A JønssonNatural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark.ORCID https://orcid.org/0000-0002-1875-9504
Per G P EricsonDepartment of Bioinformatics and Genetics, Swedish Museum of Natural History, Stockholm, Sweden.ORCID https://orcid.org/0000-0002-4143-9998
Mozes P K BlomMuseum für Naturkunde, Leibniz Institut für Evolutions- und Biodiversitätsforschung, Berlin, Germany.ORCID https://orcid.org/0000-0002-6304-9827

Funding

Carlsbergfondet CF15-0078Carlsbergfondet CF15-0079Carl Tryggers Stiftelse för Vetenskaplig Forskning CTS 20: 195Magnus Bergvalls Stiftelse 2020-03610Stiftelsen Olle Engkvist Byggmästare 211-0073Vetenskapsrådet 2017-3693Vetenskapsrådet 2019-03900Villum Fonden project no. 15560
6 · The paper itself

Abstract

Biological specimens in natural history collections constitute a massive repository of genetic information. Many specimens have been collected in areas in which they no longer exist or in areas where present-day collecting is not possible. There are also specimens in collections representing populations or species that have gone extinct. Furthermore, species or populations may have been sampled throughout an extensive time period, which is particularly valuable for studies of genetic change through time. With the advent of high-throughput sequencing, natural history museum resources have become accessible for genomic research. Consequently, these unique resources are increasingly being used across many fields of natural history. In this paper, we summarize our experiences of resequencing hundreds of genomes from historical avian museum specimens. We publish the protocols we have used and discuss the entire workflow from sampling and laboratory procedures, to the bioinformatic processing of historical specimen data.

Indexed as

BirdsMuseumsAnimalsGenomicsHigh-Throughput Nucleotide SequencingSequence Analysis, DNAbirdsgenomic librariesmuseomicsnatural history collections

Identifiers

PMID35661418
PMCPMC9542604

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.