Evidence map›Paper›PMID 35661004›Full record

ArticleAging2022

DNA methylation-regulated YTHDF2 correlates with cell migration and immune cell infiltration in glioma.

Xiulin Jiang, Xi Chen, Xiaobin Huang, Chunyan Wang, Chenyang Wang, Chenglong Pan, William C Cho, Zhi Nie, Jun Pu, Weixiang Wang

Open access · hybridAbstract read
In one paragraph

Article in Aging, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.3field-weighted citation impact, top 51% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 4 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 1 country.

Xiulin JiangKunming College of Life Science, University of Chinese Academy of Sciences, Beijing 100049, China.
Xi ChenDepartment of Neurosurgery, The Second Affiliated Hospital of Kunming Medical University, Kunming, 650223, China.
Xiaobin HuangDepartment of Neurosurgery, The Second Affiliated Hospital of Kunming Medical University, Kunming, 650223, China.
Chunyan WangDepartment of Pathology, The First Affiliated Hospital of Kunming Medical University, Kunming 650032, Yunnan, China.
Chenyang WangDepartment of Pathology, The First Affiliated Hospital of Kunming Medical University, Kunming 650032, Yunnan, China.
Chenglong PanDepartment of Pathology, The First Affiliated Hospital of Kunming Medical University, Kunming 650032, Yunnan, China.
William C ChoDepartment of Clinical Oncology, Queen Elizabeth Hospital, Hong Kong SAR, China.
Zhi NieDepartment of Neurology, The First Affiliated Hospital of Kunming Medical University, Kunming 650032, Yunnan, China.
Jun PuDepartment of Neurosurgery, The Second Affiliated Hospital of Kunming Medical University, Kunming, 650223, China.
Weixiang WangDepartment of Clinical Laboratory, The People's Hospital of Lishui, Lishui, Zhejiang 323000, China.
First Affiliated Hospital of Kunming Medical University · CNKunming Medical University · CNLishui City People's Hospital · CNQueen Elizabeth Hospital · CNUniversity of Chinese Academy of Sciences · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundGlioma is a lethal malignant brain tumor, it comprises about 80% of all malignant brain tumours. Mounting evidence has reported that YTHDF2 plays a significant role in the cancer progression. However, the effects of YTHDF2 on the prognosis of low-grade gliomas (LGGs) and its correlation with tumor immune infiltration are unclear. The present study was designed to determine the biological functions of YTHDF2 in glioma and to evaluate the association of YTHDF2 expression with glioma progression.

methodsClinical data on patients with glioma were obtained from The Cancer Genome Atlas (TCGA), the Chinese Glioma Genome Atlas (CGGA), the Gene Expression Omnibus (GEO), as well as the Rembrandt and Gravendeel databases. The correlations among YTHDF2 expression, pathological characteristics, glioma progression and clinical outcome were evaluated. In addition, the correlation of YTHDF2 expression with immune cell infiltration was analyzed too.

resultsWe found that YTHDF2 was significantly up-regulated in LGGs which correlated with tumor grade and poor prognosis. Interestingly, we showed that YTHDF2 expression in LGG was associated with copy number variation, DNA hypomethylation, and induced transcription factor YY1. Besides, KEGG pathway analysis shows that YTHDF2 mainly participates in the immune response and oncogenic signaling pathway. Additionally, YTHDF2 is positively associated with diverse immune cells infiltration, immune cells, and multiple immune checkpoint molecules. Finally, we confirmed that YTHDF2 was highly expressed in LGGs tissues and correlated with the tumor grade with immunohistochemistry assay. More importantly, our results demonstrated that YTHDF2 was elevated in GBM cells. Knockdown of YTHDF2 significantly inhibits the proliferation and migration of GBM cells.

conclusionYTHDF2 correlates with glioma progression and immune cell infiltration, suggesting that YTHDF2 may be a useful prognostic biomarker for glioma.

Indexed as

Brain NeoplasmsGliomaBiomarkers, TumorCell MovementDNA Copy Number VariationsDNA MethylationHumansImmune Checkpoint ProteinsPrognosisRNA-Binding ProteinsTranscription FactorsBiomarkers, TumorImmune Checkpoint ProteinsRNA-Binding ProteinsTranscription FactorsYTHDF2 protein, humancell migrationcell proliferationDNA methylationimmune infiltrationYTHDF2

Identifiers

PMID35661004
PMCPMC9596213
OpenAlexW4281635078

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.