Evidence map›Paper›PMID 35659110›Full record

ArticleAnimal microbiome2022

Effect of antimicrobial administration on fecal microbiota of critically ill dogs: dynamics of antimicrobial resistance over time.

Julie Menard, Robert Goggs, Patrick Mitchell, Yufan Yang, Sarah Robbins, Rebecca J Franklin-Guild, Anil J Thachil, Craig Altier, Renee Anderson, Gregory G Putzel and 2 more

Open access · goldAbstract read
In one paragraph

Article in Animal microbiome, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed, 1 pooled it
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 1 synthesis or guideline pooled it, 15 citations in OpenAlex.

  1. Risk factors for antimicrobial-resistantFrontiers in veterinary science · 2024
    Pooled it
  2. Article
  3. Review
  4. Article
  5. Review
  6. Evolutionary genomic analyses of canineApplied and environmental microbiology · 2024
    Article
  7. Article
  8. Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 2 countries.

Julie MenardDepartment of Veterinary Diagnostic and Clinical Sciences, Faculty of Veterinary Medicine, University of Calgary, Calgary, AB, Canada. julie.menard@ucalgary.ca.ORCID http://orcid.org/0000-0002-2700-2466
Robert GoggsDepartment of Clinical Sciences, College of Veterinary Medicine, Cornell University, Ithaca, NY, USA.
Patrick MitchellDepartment of Population Medicine and Diagnostic Sciences, College of Veterinary Medicine, Cornell University, Ithaca, NY, USA.
Yufan YangDepartment of Population Medicine and Diagnostic Sciences, College of Veterinary Medicine, Cornell University, Ithaca, NY, USA.
Sarah RobbinsDepartment of Clinical Sciences, College of Veterinary Medicine, Cornell University, Ithaca, NY, USA.
Rebecca J Franklin-GuildDepartment of Population Medicine and Diagnostic Sciences, College of Veterinary Medicine, Cornell University, Ithaca, NY, USA.
Anil J ThachilDepartment of Population Medicine and Diagnostic Sciences, College of Veterinary Medicine, Cornell University, Ithaca, NY, USA.
Craig AltierDepartment of Population Medicine and Diagnostic Sciences, College of Veterinary Medicine, Cornell University, Ithaca, NY, USA.
Renee AndersonDepartment of Population Medicine and Diagnostic Sciences, College of Veterinary Medicine, Cornell University, Ithaca, NY, USA.
Gregory G PutzelMicrobiome Core Lab and Jill Roberts IBD Institute, Weill Cornell Medicine, Cornell University, New York City, NY, USA.
Holly McQuearyDepartment of Public and Ecosystem Health, College of Veterinary Medicine, Cornell University, Ithaca, NY, USA.
Laura B GoodmanDepartment of Public and Ecosystem Health, College of Veterinary Medicine, Cornell University, Ithaca, NY, USA.
Cornell University · USUniversity of Calgary · CA

Funding

Studies on Antimicrobial resistance in bacteria of veterinary importanceU18FD006379 · FDA · CORNELL UNIVERSITY · PI ALTIER, CRAIG · 2018 to 2022
$300k
FDA HHS U18 FD006379
6 · The paper itself

Abstract

backgroundMultidrug resistance in companion animals poses significant risks to animal and human health. Prolonged antimicrobial drug (AMD) treatment in animals is a potential source of selection pressure for antimicrobial resistance (AMR) including in the gastrointestinal microbiota. We performed a prospective study of dogs treated for septic peritonitis, pyometra, or bacterial pneumonia and collected repeated fecal samples over 60 days. Bacterial cultures and direct molecular analyses of fecal samples were performed including targeted resistance gene profiling.

resultsResistant Escherichia coli increased after 1 week of treatment (D1:21.4% vs. D7:67.9% P < 0.001) and returned to baseline proportions by D60 (D7:67.9% vs D60:42.9%, P = 0.04). Dogs with septic peritonitis were hospitalized significantly longer than those with pneumonia or pyometra. Based on genetic analysis, Simpson's diversity index significantly decreased after 1 week of treatment (D1 to D7, P = 0.008), followed by a gradual increase to day 60 (D1 and D60, P = 0.4). Detection of CTX-M was associated with phenotypic resistance to third-generation cephalosporins in E. coli (OR 12.1, 3.3-68.0, P < 0.001). Lincosamide and macrolide-resistance genes were more frequently recovered on days 14 and 28 compared to day 1 (P = 0.002 and P = 0.004 respectively).

conclusionAMR was associated with prescribed drugs but also developed against AMDs not administered during the study. Companion animals may be reservoirs of zoonotic multidrug resistant pathogens, suggesting that veterinary AMD stewardship and surveillance efforts should be prioritized.

Indexed as

Antimicrobial resistance genesEnterococcusEscherichia coliMicrobiotaSepsisVeterinary

Identifiers

PMID35659110
PMCPMC9167539
OpenAlexW4281808333

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.