Evidence map›Paper›PMID 35658976›Full record

ArticleCell host & microbe2022

Tet2 deficiency drives liver microbiome dysbiosis triggering Tc1 cell autoimmune hepatitis.

Surya P Pandey, Mackenzie J Bender, Alex C McPherson, Catherine M Phelps, Luzmariel Medina Sanchez, Mohit Rana, Lee Hedden, Kishan A Sangani, Li Chen, Jake H Shapira and 14 more

Open access · greenAbstract read
In one paragraph

Article in Cell host & microbe, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
7.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 60 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Experimental Models of Autoimmune Hepatitis: Disease Fidelity and Translational Relevance.Liver international : official journal of the International Association for the Study of the Liver · 2026
    Review
  5. Article
  6. Bidirectional Modulation of the Tumor Immune Microenvironment by Gut Microbiota-Derived Indoles: Mechanisms and Therapeutic Potential.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2026
    Review
  7. Review
  8. Article
  9. Article
  10. Review
  11. Review
  12. Article
  13. Review
  14. Review
  15. Article
  16. Article
  17. Gut microbes · 2025
    Review
  18. Autoimmune Hepatitis Associated with Other Autoimmune Diseases: A Critical Review.Journal of clinical and translational hepatology · 2025
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors at 4 institutions in 2 countries.

Surya P PandeyDepartment of Immunology, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA.
Mackenzie J BenderDepartment of Immunology, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA.
Alex C McPhersonDepartment of Immunology, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA; Department of Infectious Diseases and Microbiology, University of Pittsburgh School of Public Health, Pittsburgh, PA, USA.
Catherine M PhelpsDepartment of Immunology, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA.
Luzmariel Medina SanchezDepartment of Immunology, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA.
Mohit RanaDepartment of Immunology, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA.
Lee HeddenDepartment of Immunology, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA.
Kishan A SanganiDepartment of Medicine, University of Chicago, Chicago, IL, USA; Committee on Immunology, University of Chicago, Chicago, IL, USA.
Li ChenDepartment of Medicine, University of Chicago, Chicago, IL, USA; Committee on Immunology, University of Chicago, Chicago, IL, USA.
Jake H ShapiraDepartment of Immunology, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA.
Magdalena SillerDepartment of Immunology, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA.
Chhavi GoelDepartment of Immunology, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA.
Elena F VerdúDivision of Gastroenterology, Department of Internal Medicine, Farncombe Family Digestive Health Research Institute, McMaster University, Hamilton, ON, Canada.
Bana JabriDepartment of Medicine, University of Chicago, Chicago, IL, USA; Committee on Immunology, University of Chicago, Chicago, IL, USA; Department of Pathology, University of Chicago, Chicago, IL, USA; Department of Pediatrics, University of Chicago, Chicago, IL, USA.
Alexander ChangDepartment of Biomedical Informatics, University of Pittsburgh, Pittsburgh, PA, USA.
Uma R ChandranDepartment of Biomedical Informatics, University of Pittsburgh, Pittsburgh, PA, USA.
Steven J MullettDepartment of Pharmacology and Chemical Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA; Health Sciences Metabolomics and Lipidomics Core, University of Pittsburgh, Pittsburgh, PA, USA.
Stacy G WendellDepartment of Pharmacology and Chemical Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA; Health Sciences Metabolomics and Lipidomics Core, University of Pittsburgh, Pittsburgh, PA, USA.
Aatur D SinghiDepartment of Pathology, University of Pittsburgh, Pittsburgh, PA, USA.
Jeremy S TilstraDepartment of Medicine, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA.
Joseph F PierreDepartment of Nutritional Sciences, University of Wisconsin-Madison, Madison, WI, USA.
Gavin E ArteelDivision of Gastroenterology, Hepatology and Nutrition, Department of Medicine, Pittsburgh Liver Research Center, University of Pittsburgh, Pittsburgh, PA, USA.
Reinhard HinterleitnerDepartment of Immunology, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA.
Marlies MeiselDepartment of Immunology, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA. Electronic address: marlies@pitt.edu.
University of Pittsburgh · USUniversity of Chicago · USMcMaster University · CAUniversity of Wisconsin–Madison · US

Funding

VECTOR CORE FACILITYP30CA047904 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI JOHN C. BYRD · 1988 to 2026
$158.0M
MEDICAL SCIENTIST TRAININGT32GM007281 · NIGMS · UNIVERSITY OF CHICAGO · PI CLARK, MARCUS RAMSAY · 1985 to 2022
$32.1M
Pittsburgh Liver Research CenterP30DK120531 · NIDDK · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI DAVID A GELLER · 2019 to 2026
$10.9M
Autoimmunity and Immunopathology Training ProgramT32AI089443 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI SHLOMCHIK, MARK J · 2010 to 2024
$6.6M
Role of microbial-modulated bile acid receptor signaling in breast cancerR01CA253329 · NCI · UNIVERSITY OF TENNESSEE HEALTH SCI CTR · PI Katherine Loree Cook, Liza Makowski-Hayes · 2020 to 2026
$3.0M
Systemic immunoregulatory consequences of bacterial translocation during health and diseaseR01DK130897 · NIDDK · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI MEISEL, MARLIES · 2021 to 2025
$2.2M
Role of ECM and inflammatory remodeling in alcohol-induced liver and lung damage-diversity supplementR01AA021978 · NIAAA · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI ARTEEL, GAVIN E · 2014 to 2018
$1.8M
Evaluating T cell Exhaustion in Systemic Lupus ErythematosusK08AR075056 · NIAMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI TILSTRA, JEREMY SCOTT · 2019 to 2023
$840k
Bringing Untargeted Metabolomics to PittS10OD023402 · OD · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI GELHAUS, STACY LYNN · 2018 to 2018
$594k
Modeling Host-Fungal Interactions in Hirschsprung-Associated EnterocolitisR21AI163503 · NIAID · UNIVERSITY OF TENNESSEE HEALTH SCI CTR · PI GOSAIN, ANKUSH, PIERRE, JOSEPH F · 2021 to 2022
$441k
Gut mucosal type-2 immunity to parasitic infectionsR21AI163721 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI HINTERLEITNER, REINHARD · 2021 to 2022
$433k
Role of probiotic Lactobacillus reuteri in orchestrating systemic anti-tumor immunityR21CA259636 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI MEISEL, MARLIES · 2022 to 2023
$377k
NCI NIH HHS P30 CA047904NCI NIH HHS R01 CA253329NCI NIH HHS R21 CA259636NIAAA NIH HHS R01 AA021978NIAID NIH HHS R21 AI163503NIAID NIH HHS R21 AI163721NIAID NIH HHS T32 AI089443NIAMS NIH HHS K08 AR075056NIDDK NIH HHS P30 DK120531NIDDK NIH HHS R01 DK130897NIGMS NIH HHS T32 GM007281NIH HHS S10 OD023402
6 · The paper itself

Abstract

The triggers that drive interferon-γ (IFNγ)-producing CD8 T cell (Tc1 cell)-mediated autoimmune hepatitis (AIH) remain obscure. Here, we show that lack of hematopoietic Tet methylcytosine dioxygenase 2 (Tet2), an epigenetic regulator associated with autoimmunity, results in the development of microbiota-dependent AIH-like pathology, accompanied by hepatic enrichment of aryl hydrocarbon receptor (AhR) ligand-producing pathobionts and rampant Tc1 cell immunity. We report that AIH-like disease development is dependent on both IFNγ and AhR signaling, as blocking either reverts ongoing AIH-like pathology. Illustrating the critical role of AhR-ligand-producing pathobionts in this condition, hepatic translocation of the AhR ligand indole-3-aldehyde (I3A)-releasing Lactobacillus reuteri is sufficient to trigger AIH-like pathology. Finally, we demonstrate that I3A is required for L. reuteri-induced Tc1 cell differentiation in vitro and AIH-like pathology in vivo, both of which are restrained by Tet2 within CD8 T cells. This AIH-disease model may contribute to the development of therapeutics to alleviate AIH.

Indexed as

DioxygenasesDNA-Binding ProteinsHepatitis, AutoimmuneLimosilactobacillus reuteriLiverMicrobiotaAnimalsDysbiosisInterferon-gammaLigandsMiceT-Lymphocytes, CytotoxicDioxygenasesDNA-Binding ProteinsInterferon-gammaLigandsTet2 protein, mousearyl hydrocarbon receptor agonistautoimmune hepatitisLactobacillus reuteriliver microbiomeTc1 cellsTet2

Identifiers

PMID35658976
PMCPMC9841318
OpenAlexW4281652082

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.