Evidence map›Paper›PMID 35657776›Full record

ArticleThe Journal of heredity2022

A Unique Mitochondrial Gene Block Inversion in Antarctic Trematomin Fishes: A Cautionary Tale.

Selina Patel, Clive W Evans, Alex Stuckey, Nicholas J Matzke, Craig D Millar

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of heredity, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
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  5. Article
  6. Complete mitochondrial genome ofMitochondrial DNA. Part B, Resources · 2023
    Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Selina PatelSchool of Biological Sciences, University of Auckland, Private Bag 92019, Auckland, New Zealand.
Clive W EvansSchool of Biological Sciences, University of Auckland, Private Bag 92019, Auckland, New Zealand.
Alex StuckeyGenomics England, Queen Mary University of London, Dawson Hall, London EC1M 6BQ, UK.
Nicholas J MatzkeSchool of Biological Sciences, University of Auckland, Private Bag 92019, Auckland, New Zealand.
Craig D MillarSchool of Biological Sciences, University of Auckland, Private Bag 92019, Auckland, New Zealand.
University of Auckland · NZGenomics England · GB

Funding

Allan Wilson Centre for Molecular Ecology and EvolutionUniversity of Auckland
6 · The paper itself

Abstract

Many Antarctic notothenioid fishes have major rearrangements in their mitochondrial (mt) genomes. Here, we report the complete mt genomes of 3 trematomin notothenioids: the bald notothen (Trematomus (Pagothenia) borchgrevinki), the spotted notothen (T. nicolai), and the emerald notothen (T. bernacchii). The 3 mt genomes were sequenced using next-generation Illumina technology, and the assemblies verified by Sanger sequencing. When compared with the canonical mt gene order of the Antarctic silverfish (Pleuragramma antarctica), we found a large gene inversion in the 3 trematomin mt genomes that included tRNAIle, ND1, tRNALeu2, 16S, tRNAVal, 12S, tRNAPhe, and the control region. The trematomin mt genomes contained 3 intergenic spacers, which are thought to be the remnants of previous gene and control region duplications. All control regions included the characteristic conserved regulatory sequence motifs. Although short-read next-generation DNA sequencing technology has allowed the rapid and cost-effective sequencing of a large number of complete mt genomes, it is essential in all cases to verify the assembly in order to prevent the publication and use of erroneous data.

Indexed as

Genes, MitochondrialPerciformesAnimalsAntarctic RegionsChromosome InversionFishesmitochondrial genomeNototheniodeiTrematomus bernacchiiTrematomus nicolaiTrematomus (Pagothenia) borchgrevinki

Identifiers

PMID35657776
PMCPMC9308043
OpenAlexW4281922219

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.