Evidence map›Paper›PMID 35657585›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2022

RPLC-RPLC-MS/MS for Proteoform Identification.

Kellye A Cupp-Sutton, Zhe Wang, Dahang Yu, Si Wu

Open access · greenAbstract read
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
3.2field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Multidimensional Separations in Top-Down Proteomics.Analytical science advances · 2023
    Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Kellye A Cupp-SuttonDepartment of Chemistry and Biochemistry, University of Oklahoma, Norman, OK, USA.
Zhe WangDepartment of Chemistry and Biochemistry, University of Oklahoma, Norman, OK, USA.
Dahang YuDepartment of Chemistry and Biochemistry, University of Oklahoma, Norman, OK, USA.
Si WuDepartment of Chemistry and Biochemistry, University of Oklahoma, Norman, OK, USA. si.wu@ou.edu.
University of Oklahoma · US

Funding

Quantitative Analysis of Serum Autoantibody Repertories in Systemic Lupus ErythematosusR01AI141625 · NIAID · UNIVERSITY OF OKLAHOMA · PI SINGH, SHANTERI, SMITH, KENNETH MICHAEL · 2019 to 2023
$2.1M
NIAID NIH HHS R01 AI141625
6 · The paper itself

Abstract

Top-down proteomics methods have a distinct advantage over bottom-up methods in that they analyze intact proteins rather than digested peptides which can result in loss of information regarding the intact protein. However, the analysis of intact proteins using top-down proteomics methods has been impeded by the low resolution of typical separation approaches applied in bottom-up proteomics studies. To increase the coverage of intact proteomes, orthogonal, two-dimensional separation techniques have been developed to improve the separation efficiency; in this chapter, we describe a two-dimensional HPLC separation technique that utilizes a high-pH mobile phase in the first dimension followed by a low-pH mobile phase in the second dimension. This two-dimensional pH-based HPLC approach demonstrates increased separation efficiency of intact proteins and increased proteome coverage when compared to one-dimensional HPLC in the analysis of larger and lower abundance proteoforms.

Indexed as

ProteomicsTandem Mass SpectrometryChromatography, High Pressure LiquidPeptidesProteomePeptidesProteome2D separationIntact proteoformsProteomicsRPLCTop-down MS

Identifiers

PMID35657585
PMCPMC9523456
OpenAlexW4285209215

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.