Evidence map›Paper›PMID 35657094›Full record

ArticleNucleic acids research2022

Noncanonical amino acid mutagenesis in response to recoding signal-enhanced quadruplet codons.

Yan Chen, Xinyuan He, Bin Ma, Kun Liu, Tianyu Gao, Wei Niu, Jiantao Guo

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.8field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 9 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Article
  5. Non-Canonical Amino Acids in Analyses of Protease Structure and Function.International journal of molecular sciences · 2023
    Review
  6. Article
  7. Article
  8. Genetic Code Expansion inACS synthetic biology · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Yan ChenDepartment of Chemistry, University of Nebraska-Lincoln, Lincoln, NE 68588, USA.
Xinyuan HeDepartment of Chemical & Biomolecular Engineering, University of Nebraska-Lincoln, Lincoln, NE 68588, USA.
Bin MaDepartment of Chemistry, University of Nebraska-Lincoln, Lincoln, NE 68588, USA.
Kun LiuDepartment of Chemistry, University of Nebraska-Lincoln, Lincoln, NE 68588, USA.
Tianyu GaoDepartment of Chemistry, University of Nebraska-Lincoln, Lincoln, NE 68588, USA.
Wei NiuDepartment of Chemical & Biomolecular Engineering, University of Nebraska-Lincoln, Lincoln, NE 68588, USA.
Jiantao GuoDepartment of Chemistry, University of Nebraska-Lincoln, Lincoln, NE 68588, USA.ORCID 0000-0001-6983-9953
University of Nebraska–Lincoln · US

Funding

Targeted mass spectrometry approaches to understand CART processing and recepter interactionsP20GM113126 · NIGMS · UNIVERSITY OF NEBRASKA LINCOLN · PI RAZAVI RIZI, MOHAMMAD · 2016 to 2025
$20.8M
Development of proximity-induced fluorogenic reactions for imaging biomolecular interaction through noncanonical amino acid mutagenesis in response to quadruplet codon and recoding signalR01GM138623 · NIGMS · UNIVERSITY OF NEBRASKA LINCOLN · PI GUO, JIANTAO · 2020 to 2021
$613k
NIGMS NIH HHS P20 GM113126NIGMS NIH HHS R01 GM138623
6 · The paper itself

Abstract

While amber suppression is the most common approach to introduce noncanonical amino acids into proteins in live cells, quadruplet codon decoding has potential to enable a greatly expanded genetic code with up to 256 new codons for protein biosynthesis. Since triplet codons are the predominant form of genetic code in nature, quadruplet codon decoding often displays limited efficiency. In this work, we exploited a new approach to significantly improve quadruplet UAGN and AGGN (N = A, U, G, C) codon decoding efficiency by using recoding signals imbedded in mRNA. With representative recoding signals, the expression level of mutant proteins containing UAGN and AGGN codons reached 48% and 98% of that of the wild-type protein, respectively. Furthermore, this strategy mitigates a common concern of reading-through endogenous stop codons with amber suppression-based system. Since synthetic recoding signals are rarely found near the endogenous UAGN and AGGN sequences, a low level of undesirable suppression is expected. Our strategy will greatly enhance the utility of noncanonical amino acid mutagenesis in live-cell studies.

Indexed as

Genetic CodeGenetic TechniquesMutagenesisAmino AcidsProtein BiosynthesisProteinsAmino AcidsProteins

Identifiers

PMID35657094
PMCPMC9458425
OpenAlexW4281840248

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.